Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1210 ATGAATATTTATATACAAATACTTTTGAGTTCTACTATAATTCAAACTCCATCTCCGACTCTAATTCAAATTCTTTTCCTGCTAACAGGTCATGGTGGATTTGGTCATGTTGTGTTGTGCAAAAATAAACTAGATGGAAGACAGTATGCGGTGAAGAAGATTCGTCTCAAAGACAAAAGTCCACCTGTTTATGACCGGATATTGAGGGAAGTGGCCACGCTTTCCCGTTTGCAGCATCAACATGTTGTCCGTTACTATCAGGCATGGTTTGAAACAGGAGTTTCTGGTTCTTTTGGGGACACAACTTGGGGCTCAATGACACCAGCAAGCTCAAGTTTCAGCTACAAGGGTGCAAGCTCAGCAGATGTAAATGTGCATGAGAATAAGCTTGAATCAACATATTTGTATATACAGATGGAATACTGTCCTAGGACTCTCCGCCAGATGTTTGAATCATATAGCCATTTTGACAAAGAATTGGCGTGGCATTTATTTCGCCAAATTGTTGAAGGCTTGGTACATATACATGGACAAGGAATCATCCATCGGGACTTAACACCAAATAACATCTTCTTTGATGCTCGCAATGATATTAAAATTGGAGACTTTGGTCTTGCCAAGTTTTTGAAGTTGGAGCAGTTGGATCAGGATCCAGGTGTCCCTCCAGATACAACTGGAGTATCAGTTGATCGTACTGGTCAAGTTGGTACCTATTTTTACACTGCACCAGAAATTGAGCAAGGGTGGCCAAAGATTGATGAAAAGGCAGACATGTACAGCTTAGGAGTTGTGTTCTTTGAACTATGGCACCCGTTTGGAACAGCAATGGAGAGAAGCATCGTTCTTAATGATCTGAAACAGAAGGGAGAACTCCCTTCTTCTTGGGTTGCTGAATTTCCTGAACAAGCATCCCTTTTGCAGCACTTGATGTCTCCAAGTCCATCTGATCGTCCATTTGCCACAGAACTTTTACAGCATGCATTTCCTCCAAGGATGGAATACGAGTTGCTAGACAACATTCTACGAACAATGCAGACTTCAGAGGACACAGGTGTTTATGATAAAGTTGTTAATGCTATTTTTGACAAAGAAATGTTAAGTGCAAAAAACCTCCAACATTTTGGAAGATTGAGGTTAGTTGGAGATGATACATCCTCTATCCAGTACACAGATTCAGACACTGAACTCCGTGATCATGTTAGTGAGGTCACAAGGGAAGTGTTTAGGCATCACTGTGCAAAGCGTCTCGAAGTTGTACCAATTCGTTTGCTGGATGATTGCCCACAAACCATCAGGAATACTGTTAAGCTACTGACCCATGGAGGAGACATGATTGAGCTTTGTCATGAGCTGCGTTTGCCTTTTGTTAATTGGGTTATTACGAATCAGAAATCATCTTTCAAAAGATATGAAGTATCCTATGTTTATAGGAGAGCAATTGGTCATTCAGCACCAAACCGTTATCTTCAGGGAGATTTTGATATGATTGGAGGTGCAACAGCATTGACAGAGGCAGAGGTTATCAAGGTGGCAATGGACATTGTAACCCATTTCTTCCATTCCAATTCATGCGGTATTCATCTAAATCATGGTGATTTATTGGAGGCTATCTGGTCTTGGATAGGAATCAAGGCAGAGCATAGGCAGAAAGTGGCAGAGCTTCTCTCTATGATGAGTTCTTTGCGGCCTCAATCCCCTGAACGGAAATTAAAATGGGTGGTGATAAGGCGACAGCTTCAGCAGGAACTTAATCTAGCAGAAGCTGTTGTAAATAGGTTGCAAACAGTAGGATTAAGGTTCTGTGGAGCTGCTGATCAGGCTCTTCCTAGATTGAGGGGAGCCCTGCCCGCTGATAAACCTACACGCAAGGCACTTGATGAATTGGCAGATCTTTTTAGCTACTTAAGAGTCTGGAGGATCGAAAAACATGTTTTCATAGATGCCCTTATGCCCCCGACAGAGTCTTATCATAGGGATTTATTTTTTCAGATATACTTAATGAAGGAGAACAATCCTGGATCACTCAAAGAAGGAGTATTGCTCGCAATTGGCGGTCGCTATGATCAACTGCTTCGTGAAATGTGTTTTGCATCTAAATCAAATCCTCCGGGTGCTGTTGGGGTCAGCCTTGCCCTAGAGACAGTGATTCAGCATTCTTCCATGGATATCCGACCTTTTAGAAATGAAGTTGGTATTAATGTTCTTGTTTGTTCAAGAGGAGGAGGTGGGTTATTGGAAGAACGCATGGAACTAGTTGCTGGGCTATGGGAAGAGAACATCAAGGCTGAGTTTGTTCCTGTATCTGATCCAAGCCTTACAGAGCAGTATGAATATGCAAATGAGCATGATATCAAGTGTCTTGTTATTATAACAGACACAGGTGTATCCCCAACAGATTTTGTTAAGGTCCGCCATCTTGAACTTAAGAAGGAGAAAGAAGTTGAAAGAGAAAACCTTGTCAAGCAATCCAAAGCAGTAGCAGTTGTGGTAGCAGCGTTTTCTTTGCTTCAAGAACAATCCAATGAAGTTGCAATTCCTTATCTGGAGACCTGGCAATCTTGGCACAAAAAAGGGGGCTAG 2580 41.94 MNIYIQILLSSTIIQTPSPTLIQILFLLTGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSPPVYDRILREVATLSRLQHQHVVRYYQAWFETGVSGSFGDTTWGSMTPASSSFSYKGASSADVNVHENKLESTYLYIQMEYCPRTLRQMFESYSHFDKELAWHLFRQIVEGLVHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDPGVPPDTTGVSVDRTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERSIVLNDLKQKGELPSSWVAEFPEQASLLQHLMSPSPSDRPFATELLQHAFPPRMEYELLDNILRTMQTSEDTGVYDKVVNAIFDKEMLSAKNLQHFGRLRLVGDDTSSIQYTDSDTELRDHVSEVTREVFRHHCAKRLEVVPIRLLDDCPQTIRNTVKLLTHGGDMIELCHELRLPFVNWVITNQKSSFKRYEVSYVYRRAIGHSAPNRYLQGDFDMIGGATALTEAEVIKVAMDIVTHFFHSNSCGIHLNHGDLLEAIWSWIGIKAEHRQKVAELLSMMSSLRPQSPERKLKWVVIRRQLQQELNLAEAVVNRLQTVGLRFCGAADQALPRLRGALPADKPTRKALDELADLFSYLRVWRIEKHVFIDALMPPTESYHRDLFFQIYLMKENNPGSLKEGVLLAIGGRYDQLLREMCFASKSNPPGAVGVSLALETVIQHSSMDIRPFRNEVGINVLVCSRGGGGLLEERMELVAGLWEENIKAEFVPVSDPSLTEQYEYANEHDIKCLVIITDTGVSPTDFVKVRHLELKKEKEVERENLVKQSKAVAVVVAAFSLLQEQSNEVAIPYLETWQSWHKKGG* 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22272871 22332432 + Vvi5g1210 Vvi5g1210 787352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1210 859 Pfam Anticodon binding domain of tRNAs 733 821 IPR024435 -
Vvi5g1210 859 Pfam Histidyl-tRNA synthetase 481 715 IPR041715 -
Vvi5g1210 859 PANTHER HISTIDYL-TRNA SYNTHETASE 30 823 - -
Vvi5g1210 859 Coils Coil 576 596 - -
Vvi5g1210 859 CDD STKc_EIF2AK4_GCN2_rpt2 30 327 - -
Vvi5g1210 859 Gene3D Transferase(Phosphotransferase) domain 1 144 336 - -
Vvi5g1210 859 Gene3D - 730 826 IPR036621 -
Vvi5g1210 859 SUPERFAMILY Class II aaRS ABD-related 732 821 - -
Vvi5g1210 859 Pfam Protein kinase domain 30 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1210 859 Gene3D Phosphorylase Kinase; domain 1 26 141 - -
Vvi5g1210 859 PANTHER EIF-2-ALPHA KINASE GCN2 30 823 - -
Vvi5g1210 859 ProSitePatterns Tyrosine protein kinases specific active-site signature. 180 192 IPR008266 GO:0004672|GO:0006468
Vvi5g1210 859 SUPERFAMILY Protein kinase-like (PK-like) 30 345 IPR011009 -
Vvi5g1210 859 Gene3D Bira Bifunctional Protein; Domain 2 387 724 IPR045864 -
Vvi5g1210 859 SUPERFAMILY Class II aaRS and biotin synthetases 389 716 IPR045864 -
Vvi5g1210 859 ProSiteProfiles Protein kinase domain profile. 23 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1210 K16196 EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1] - vvi:100249259 1584.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1210 Blo01g00199 . . Bda08g00153 . . . Bma05g01170 Cmo08g00205 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0565 . . . . . . . . . . . . . . . . . . . . Car08g00179 . . Cpe17g01092 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006684 2 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76650 PF00069 Pkinase 4.10E-48 CL0016 Vvi PK