Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1211 ATGGGAATTTCTAGGAGTTTGTTGGAACATTTTCTCAACTGGGTCTTGAAGATCCAAACATGGCAAGCTGTATTTCTTGTACAAATTAGAGTCTTAGTGGTGTTCTCAAATTTATGGTGGTTAGTTTCAGGCCTAGGTTCCATGTCTTCCATAGCCATTTCATATGGTGAGAATGGCCCTGTTTTCTGTGGTCTAAAATCAGATGGGTCTCATCTTGTGACTTGTTATGGATCAAATTCTGCTATAATCTATGGAACCCCTGCCCATTTCCCCTTTATGGGACTAACCGCCGGGGACGGCTTCGTATGTGGGCTTTTAGTGGATTCTAACCAGCCTTACTGCTGGGGAAGTAGTCGTTATGTTCAAATGGGTGTTCCTCAACCCATGATCAAAGGGGCTGAGTACTTAGAAATTAGTGCAGGCGATTACCATTTATGTGGATTGAGAGAACCCTTGACGGGAAGGCTTAGGAACTATTCTCTTGTAGATTGTTGGGGGTATAACATGACTAGAAGCTATAGGTTTGATGGGCAGTTGCAGTCCATCTCTGCTGGGTCAGAGTTCAACTGTGGATTGTTTTCTCAAAATAGAACTGTTTTCTGTTGGGGGGATGAAACTAGTAGCCGGGTAACGAGCTTAATCCCTCAAGAAATGAGGTTCCAGAAGATTGCAGCTGGTGGGTACCATGTTTGTGGCATTTTGGAGGGGGCTAACTCAAGAGTTTTTTGTTGGGGGGGAAGGAGTTTGGACATTGAGGAAGAAATATCTACTGCATACACTGGACAAGGCAATGTGGACTCGGCTCCAAAAGATCCAATGCTTTCAGTTGTGGGGGGGAAATTTCATGCTTGTGGAATCAGGAGCTCGGATCGCGGGGTGACTTGTTGGGGTTTTCGTGTCAAGACAAGTACTCTACCTCCTGATGGCATTAAGGTGTATGAAATTGCAGCTGGGAATTATTTCACTTGTGGAATCCTTGCTGAGAAATCTCTCCTTCCTGTTTGCTGGGGTCTCGGGTTTCCCTCATCGCTCCCTTTAGCTGTATCTCCTGGGCTTTGCACCCCTAGTCCTTGCCTTCCAGGGTTCTATGAATTTAACCATGAAAGCCCGCCTTGCAAGTCTCTAAATTCTCATGTCTGCTTGCCCTGCAGCAGTGCCTGCCTGGATGACATGTACCAGAAAGCTGAATGCACTTTGAAATCTGATCGACAGTGTGAATTTAACTGCTCAGGCTGTTACTCAGCTGAATGCTTCTCGAATTGTTCTTCTTCCTCTTATGCAAATGCCATAACAGGAAGGAAAACTGAAAGGTTTTGGTCACTACAATTGCCAGTAGTTGTAGCAGAGGTTGCTTTTGCTGTGTTCTTGGTCAGCATTGTGTCTTTAACCACAATTCTATATGTTCGCTACAATAAGATCCGGCCTGACTTGGATGAGCTTAAGATCAGAAGAGCTCAGACCTTCACCTATGATGAACTTGAGAGAGCCACAGGCGGGTTCAAGGAAGAATCTCAAGTGGGAAAGGGAAGCTTTTCGTGCGTTTTCAAAGGGGTTTTGAAGGATGGCACAGTGGTTGCAGTTAAAAGGGCTACAATGTCTTCTGACATGAAGAAGAATTCCAAGGATGGGCGAAAAGCCATTGATATGCAGTTTGATGAGGGGAACATAGTTGAATGGGCTGTTCCTCTGATCAAATCTGGAGACATATCAGCCATTTTGGATCCAGTTCTGAAGCCCCCATCTGACCTCGAAGCGTTGAAAAGGATCGCAACAGTGGCCTACAAATGTGTGAGAATGAGAGGGAAAGAGAGGCCATCAATGGACAAAGTAACAACAGCTCTGGAACGAGCGCTTGCACAGTTGATGGGCAGCCCATGCAACGAGCAACCGATCTTGCCAACTGAGGTGGTACTGGGAAGTAGTAGACTGCACAAGAAATCCTCTCAGAGATCATCAAACCGGTCAGTCTCAGAAACCGATGTTGCAGAAGCAGAAGATCAAAGATTTGAGTTCAGAGCTCCATCATGGATAACTTTCCCCAGTGTTGCTTCCTCCCAGAGAAGGAAGTCCTCAGTTTCTGAAGCAGATGTTGATGGGAAAAACCTGGAAGCAAGAAACTTAGGCAGTGGAGGAAATGGCGGTGACGGGTTGAGAAGCTTGGAGGAGGAGATTGGGCCTGCTTCTCCTCAAGAAAACTTGTTCTTGCAGCACAACTTCTAG 2220 45.86 MGISRSLLEHFLNWVLKIQTWQAVFLVQIRVLVVFSNLWWLVSGLGSMSSIAISYGENGPVFCGLKSDGSHLVTCYGSNSAIIYGTPAHFPFMGLTAGDGFVCGLLVDSNQPYCWGSSRYVQMGVPQPMIKGAEYLEISAGDYHLCGLREPLTGRLRNYSLVDCWGYNMTRSYRFDGQLQSISAGSEFNCGLFSQNRTVFCWGDETSSRVTSLIPQEMRFQKIAAGGYHVCGILEGANSRVFCWGGRSLDIEEEISTAYTGQGNVDSAPKDPMLSVVGGKFHACGIRSSDRGVTCWGFRVKTSTLPPDGIKVYEIAAGNYFTCGILAEKSLLPVCWGLGFPSSLPLAVSPGLCTPSPCLPGFYEFNHESPPCKSLNSHVCLPCSSACLDDMYQKAECTLKSDRQCEFNCSGCYSAECFSNCSSSSYANAITGRKTERFWSLQLPVVVAEVAFAVFLVSIVSLTTILYVRYNKIRPDLDELKIRRAQTFTYDELERATGGFKEESQVGKGSFSCVFKGVLKDGTVVAVKRATMSSDMKKNSKDGRKAIDMQFDEGNIVEWAVPLIKSGDISAILDPVLKPPSDLEALKRIATVAYKCVRMRGKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDVAEAEDQRFEFRAPSWITFPSVASSQRRKSSVSEADVDGKNLEARNLGSGGNGGDGLRSLEEEIGPASPQENLFLQHNF* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22332599 22335842 - Vvi5g1211 Vvi5g1211 787353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1211 739 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 357 405 IPR001368 GO:0005515
Vvi5g1211 739 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 29 471 - -
Vvi5g1211 739 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 543 739 - -
Vvi5g1211 739 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 471 542 - -
Vvi5g1211 739 SUPERFAMILY Protein kinase-like (PK-like) 481 531 IPR011009 -
Vvi5g1211 739 MobiDBLite consensus disorder prediction 687 739 - -
Vvi5g1211 739 MobiDBLite consensus disorder prediction 642 664 - -
Vvi5g1211 739 PANTHER RECEPTOR-LIKE KINASE 29 471 - -
Vvi5g1211 739 PANTHER RECEPTOR-LIKE KINASE 471 542 - -
Vvi5g1211 739 PANTHER RECEPTOR-LIKE KINASE 543 739 - -
Vvi5g1211 739 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 110 151 IPR000408 -
Vvi5g1211 739 Gene3D - 95 358 IPR009091 -
Vvi5g1211 739 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vvi5g1211 739 SUPERFAMILY RCC1/BLIP-II 45 298 IPR009091 -
Vvi5g1211 739 Gene3D Phosphorylase Kinase; domain 1 471 558 - -
Vvi5g1211 739 MobiDBLite consensus disorder prediction 642 658 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1211 - - vvi:100266430 1091.26