Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1213 ATGATTTTGGTGAAGAGGGAGAAGCTTGGGAAATGGGTTGTTACAAAATTTGTGAGGGAGCATAATCATCCATTAGTAATTTCTTCAGGAAATAGTCGGCCAACCCCAGATGAGAAGGATAGGAAGATTCGAGAGCTATCTTCAGAGCTACACCGTGCAAATCAACGATTAGCAGCATGTAGAGAACAGCTACGCACGTTTATGACATACATCGAGGAACACACGCAGTCCCTGTCAAGAACAGTAGAAAACGTTGTTCACAACATCAGGGAAATAGAATCCGAAGATCAATAG 294 42.52 MILVKREKLGKWVVTKFVREHNHPLVISSGNSRPTPDEKDRKIRELSSELHRANQRLAACREQLRTFMTYIEEHTQSLSRTVENVVHNIREIESEDQ* 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22363161 22367947 + Vvi5g1213 Vvi5g1213 787355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1213 97 Coils Coil 43 63 - -
Vvi5g1213 97 Pfam FAR1 DNA-binding domain 1 26 IPR004330 -
Vvi5g1213 97 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 97 - -
Vvi5g1213 97 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2-LIKE ISOFORM X1 1 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1213 - - - vvi:100853873 196.052
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013352 0 3 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 1 0 1 1 1 0 0 1 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14820 PF03101 FAR1 2.50E-06 CL0274 Vvi TF