Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1218 ATGCTTTCAAGAATCAATAAAATTCCATTGACTATTTCACTAGTGCGGAGGATCATTTTTCGGGTTCACGGGGGATGCGGGTTTTGGAATTGGTGTGTTGGAAAGGGAATGGCTATTGCTTTCCCTTTGCATTTTTCCAGAGGTTTTGAGATGGATAAGAAGATGAAGAAGTGGGTTGATGAATGGCAGAAACTGGTCTATATTTCTCCATATGAAAATGCCTCACATCTTCCTCCCAAAAGTGATGAATCAGATAAGTGGGCTGTTGGGTTATTGCATGAGCTTCTTCACCTTTTTGTTCCTAGGAAGACAGATAAAGAGAATATATTGTGTCTTGGGGAGTATATGGGTCTTCGGTCGAGGTTCAAGAGGGCCTTGGTTAATCACCCGGGTATATTTTATTTATCGACTAAGACTGGGATGCATACTGTGTTGTTGAAGGAGGCATATAAGAGGGACTTGTTGATTGAGAAGCATCCACTGATGGAGATGAGGTATCAGTATATTCATCTTATGAACACTGCAAAGGAAGATAACAAGCCGATTAATGCTCCAGGAACTAGTCCTAAAAAAGAACAGAAAAATGCTAGTGATGCCAGTGGAGAAAAAAGTGAACAAGTGGAGGATGCTGAAAGTGGGGAAGAATATGAAGGTGAGCTACACAGTGATGTTGAGGAGGCTAGTGATGACGACTATGAGGATGAGGATGAGGATGATGAAATTGAGACTCACAGAGATGCGCACCAGAATGTTGCATCCAATAGAAGAACAACTAGAAAAGTGAATTTTGATGCTAGAGGACCTTTAAGAAATCCTGTCCAAGAAAGGTCAGGAGGAAGATTACCTGGTGGAAGAGAGGGACAAGGATACCCTGGTGCAAGAGAGGGACAAAGATACCCTGGTGCAAGAGAGGCACAAAGGTACCCTGGTGCAAGAGAGGGACAAAGATACCCTGGTGCAAGAGAGGGACAAAGACACCCTGGTGCAAGAGAGGGTCAAAGATACCCTGGTACAAGAGAGGGACAAAGATACCCTGGTGCAAGAGAGGGACAAAGATACCCTGGTACAAGAGAGGGACAAAGATACCCTGGTGCAAGAGAGGGACAAAGATACCCTGGTGCAAGAGAGGGACAAAGATACCCTGGTACAAGAGAGGGACTTCGTTCTGGTAAAAGAGCAGAAATGTATAATGGCAATAAAGTCCGTGGACGATCATCAGAGAAGTCAAATTTCCCAAGAAGCAGGGGGAGGTCATTGACAGACAAGAGGGCTTCTTTTCAGTAA 1284 44.16 MLSRINKIPLTISLVRRIIFRVHGGCGFWNWCVGKGMAIAFPLHFSRGFEMDKKMKKWVDEWQKLVYISPYENASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRFKRALVNHPGIFYLSTKTGMHTVLLKEAYKRDLLIEKHPLMEMRYQYIHLMNTAKEDNKPINAPGTSPKKEQKNASDASGEKSEQVEDAESGEEYEGELHSDVEEASDDDYEDEDEDDEIETHRDAHQNVASNRRTTRKVNFDARGPLRNPVQERSGGRLPGGREGQGYPGAREGQRYPGAREAQRYPGAREGQRYPGAREGQRHPGAREGQRYPGTREGQRYPGAREGQRYPGTREGQRYPGAREGQRYPGAREGQRYPGTREGLRSGKRAEMYNGNKVRGRSSEKSNFPRSRGRSLTDKRASFQ* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22409256 22415852 + Vvi5g1218 Vvi5g1218 787360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1218 427 MobiDBLite consensus disorder prediction 318 337 - -
Vvi5g1218 427 MobiDBLite consensus disorder prediction 177 427 - -
Vvi5g1218 427 MobiDBLite consensus disorder prediction 406 427 - -
Vvi5g1218 427 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 34 252 IPR045040 GO:0003723
Vvi5g1218 427 MobiDBLite consensus disorder prediction 242 263 - -
Vvi5g1218 427 PANTHER F14O23.23 PROTEIN 34 252 - -
Vvi5g1218 427 MobiDBLite consensus disorder prediction 381 398 - -
Vvi5g1218 427 MobiDBLite consensus disorder prediction 208 241 - -
Vvi5g1218 427 Pfam Plant organelle RNA recognition domain 35 176 IPR021099 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1218 - - - vvi:100257588 770.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .