Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g1220 | ATGGCACATCTGGGTGGTGGTGCGGAAGCACATGCCAGATTCAAACAGTATGAATATCGAGCCAACTCCAGTCTTGTTCTAACTACTGACTCTCGTCCTCGCGACACCCATGAGCCCACTGGTGAGCCCGAATCGCTTTATGGAAAAATAGACCCTAAAACATTTGGGGATCGGGCTTACAGGGGAAGGCCACCTGAGTTGGATGAGAAGCTCAAGAAATCAAAGAGGAAAAAGGAACGTGAGCCACAAAATGCATCTGAACCTGTGCTGAGTCGGCAGAGCAAGAGGCGGCGCATTCAAGAAGAAAGTGTTCTATCTTCTACAGAAGAAGGTGTTTACCAGCCCAAGACTAAGGAAACTAGGGCTGCTTATGAGGCCATGCTCAGTGTTATTCAACAGCAACTGGGTGGGCAGCCATTGAATATAGTTAGTGGTGCTGCAGACGAGATATTAGCTGTCCTTAAAAATGAGACGGTTAAGAACCCTGACAAGAAAAAGGAGATCGAGAGACTGTTGAACCCAATACCAAACCATATATTTGATCAGTTGGTTTCAATTGGGAGGCTTATTACTGATTTTCAAGATGAAGCGAATGAAGGTATGACTCTAAATGTTCAGGACATTGATGCATATTGGCTTCAGAGGAAGATCTCTCAGGCTTATGAACAACAGATTGACCCGCAACAGTGCCAGAAGCTTGCAGAAGAGGTACTTAAGATACTTGCTGAAGGTGATGACAGGGAAGTAGAAACTAAGCTTTTGGTGCATCTCCAGTTTGATAAGTTCAGTCTCATTAAGTTTCTCTTGAGGAATCGGCTGAAGATTGTGTGGTGTACCCGTTTGGCAAGGGCTGAAGACCAAGAAGAGAGGAAGAAGATCGAAGAAGAAATGACGGGTTCTGGTTCCGATTTGGCTGCTATTCTGGAGCAGAGGGGGCCTGGATATGAAGAAGTTCACGTGCCAGCACTGAAGGCGGCAGCATTAGGACCAGGTGAAGAGTTAGTAAAGATATCAGCCATGCCAGACTGGGCACAACCTGCTTTCAAAGGGATGACCCAGTTGAACAGGGTGCAGAGTAAAGTCTATGAGACAGCTCTTTTTACAGCCGAGAATGTTCTATTATGTGCTCCCACTGGGGCAGGGAAAACTAATGTGGCAATGCTAACCATACTTCAGCAGATTGCATTGAATAGGAATGCAGATGGGTCATTCAATCACAGCAATTATAAGATTGTCTATGTGGCACCAATGAAAGCTCTTGTTGCCGAGGTGGTTGGTAATTTGTCTAATCGCCTGCAGCATTATGATGTCAAGGTGAAAGAGCTTAGTGGAGATCAGTCACTGACCCGTCAACAAATTGAGGAAACTCAAATAATTGTCACAACCCCAGAGAAGTGGGATATCATTACCAGAAAGTCAGGAGATCGCACCTATACACAACTTGTGAAACTTCTTATCGTTGATGAGATCCATCTTCTTCATGATAACAGAGGTCCTGTGCTGGAAAGTATTGTTGCAAGAACCGTTAGGCAAATTGAGACTACAAAAGAGCATATTCGGCTGGTTGGTTTATCAGCTACACTTCCTAACTATGAAGATGTGGCACTGTTTCTACGTGTTGATCTTAAAAAGGGATTGTTCCACTTTGACAATAGTTACAGACCTTGCCCTCTTGCTCAGCAGTACATTGGAATCACAGTAAAGAAACCCCTGCAGAGATTCCAGTTGATGAATGACGTCTGTTATGAAAAAGTTATGGCTGTGGCAGGAAAGCATCAAGTTCTTATTTTTGTCCACTCAAGGAAAGAAACAGCCAAAACAGCTCAGATTCTCCATAGCCATACTGAGTTGGTCAAGAACAATGACCTTAAAGACCTTTTGCCATATGGTTTTGCAATTCATCATGCTGGGATGGCTAGGGCAGATCGTCAGCTTGTTGAGGAACTTTTTGCTGATGGACATGTGCAGGTGTTGATCTACAATCCAGAAAAAGGAGCATGGACTGAATTAAGCCCTCTGGATGTTATGCAGATGCTAGGTCGTGCAGGAAGGCCTCAATATGATTCTTATGGAGAAGGAATAATCATTACCGGCCACAGTGAACTGCAATACTATCTCTCTTTGATGAATCAACAGCTTCCTATTGAAAGTCAATTTGTCTCTAAACTGGCTGATCAGTTGAATGCAGAAATTGTTCTTGGAACTGTTCAAAATGCCAGAGAAGCCTGCAGTTGGATCGGGTACACCTACCTGTATGTTCGCATGTTACGAAATCCTACACTCTATGGTTTGTCACATGATGCTCTGACAAGAGATATAACCTTGGAGGAAAGGAGGGCCGATTTGATTCATTCCGCTGCAATCATCTTGGACAGAAATAACTTGGTTAAATATGATAGAAAAAGTGGATATTTCCAGGTCACAGACCTTGGCCGTATTGCTAGCTACTACTATATAACCCACGGGACAATATCGACATATAACGAGCATTTAAAGCCAACTATGGGTGATATTGAGCTTTGTCGGCTATTCTCGTTGAGTGAAGAATTTAAATATGTAACAGTGAGACAAGATGAGAAGATGGAACTAGCAAAGCTCTTAGATCGTGTTCCTATTCCCATCAAGGAAAGCCTGGAAGAACCTAGTGCCAAGATTAATGTTTTGCTCCAAGCATATATTTCACAGTTAAAGCTCGAAGGGCTTTCACTAACATCTGACATGGTGTTCATAACTCAGAGTGCGGGACGTCTTGTACGGGCTCTTTTTGAGATTGTGTTGAAAAGAGGATGGGCACAATTGACTGAGAAGGCTTTGAACTTGTGCAAAATGGTTAACAAGAGGATGTGGAGTGTCCAGACACCACTTCGCCAATTCAATGCAATTCCAAATGAAATTTTAATGAAATTGGAGAAGAAGGATCTTGCGTGGGAGAGGTATTATGACCTTTCATCACAGGAGTTAGGAGAGCTTATACGTTACCCTAAGATGGGCAGAACCCTTCACAAGTTCATTCACCAGTTCCCAAAGCTTGACCTTGCAGCACATGTTCAGCCAATTACTCATGGCTTGGGTCACAGTCTGTTTTGCCTGTGGTCCTGTCTTGGAGCAAATGCCAAGGATCTTGGGGAATGGATAGGGGCTACATCTCATGGCCTTTTCAACTTCCCTCCTGGTGTGCGTCCTGTGCCCCTGGAAATACACATTCAGGGAGTTGATATAGCTAATTTTGAAGCGAGGATGCAAGCAATGACAAAACCAACATATACTGCAATTGTGCAACATGCCAAGAATAGAAAACCTGCTATTGTGTTTGTGCCTACAAGGAAGCATGTACGACTTACTGCTGTGGATTTGACGACATACTCTAGTGCAGATGGTGGAGAGAACCCTACATTTCTCTTACGGTCTCCAGAAGAACTAGAGCCTTTTGTTGGCAAGATTCAAGAAGAAATGTTGAGGGCCACTCTACGTCATGGAGTGGGTTATTTGCATGAGGGCTTAACTGGTATGGATCAGGAAGTTGTGTCACAGCTGTTTGAAGCTGGGTGGATTCAGGTTTGTGTTATGAGTAGTTCATTATGCTGGGGAGTGCCATTGTCAGCTCATTTGGTGGTCAAGTTCTTGTTCTCTTTTGAAAATCCTAAATGCACAGATCCACATATAAAGGCAAATGCGCTGCTTCAAGCTCACTTCTCGCGGCAAATTGTGGGTGGGAATCTAGCATTGGACCAGCGAGAGGTGCTCCTTTCTGCTGGTAGATTGCTTCAAGCAATGGGCATGTGGGAGCGTGATTCCATGCTTCTGCAGCTTCCACACTTCACAAAGGACTTGGCTAAGAGATGCCAGGAAAACCCTGGCAAAAGTATAGAAACAGTCTTTGATTTGGTGGAGATGGAGGATGACGAGAGGCGGGAGCTCTTGCAGATGTCAGATTCACAGTTGCTGGATATTGCAAGGTTCTGCAACCGCTTCCCCAACATTGATATCACATATGAGGTGCTAGACAGTGAAAACTTGAGGGCTGGGGATGATATCACATTGCAAAGGGTTGCCTTGCAGAGAAAGTCGAAAGTGAAACTTGAATTTGCCGTGCCTGCAGAAGCTGGAAGGAAGTCGTATACTCTCTATTTCATGTGCGACTCATATCTGGGTTGTGACCAGGAATATAGCTTTTCTGTCGACGTCATGGATGCTTCTGGCCCTGAAGAAGACAGTTGA | 4218 | 44.26 | MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRGRPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQEESVLSSTEEGVYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFDQLVSIGRLITDFQDEANEGMTLNVQDIDAYWLQRKISQAYEQQIDPQQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAEDQEERKKIEEEMTGSGSDLAAILEQRGPGYEEVHVPALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAGKTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTAQILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQVLIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVRMLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLTEKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYPKMGRTLHKFIHQFPKLDLAAHVQPITHGLGHSLFCLWSCLGANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGGENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVCVMSSSLCWGVPLSAHLVVKFLFSFENPKCTDPHIKANALLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMGMWERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDSQLLDIARFCNRFPNIDITYEVLDSENLRAGDDITLQRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCDQEYSFSVDVMDASGPEEDS* | 1406 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 22424479 | 22433673 | - | Vvi5g1220 | Vvi5g1220 | 787362 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1220 | 1405 | PANTHER | DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH12-LIKE | 1049 | 1205 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH12-LIKE | 1209 | 1338 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH12-LIKE | 1346 | 1402 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH12-LIKE | 7 | 201 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH12-LIKE | 312 | 1021 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | ATP-DEPENDENT RNA AND DNA HELICASE | 7 | 201 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | ATP-DEPENDENT RNA AND DNA HELICASE | 1209 | 1338 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | ATP-DEPENDENT RNA AND DNA HELICASE | 312 | 1021 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | ATP-DEPENDENT RNA AND DNA HELICASE | 1346 | 1402 | - | - | |
| Vvi5g1220 | 1405 | PANTHER | ATP-DEPENDENT RNA AND DNA HELICASE | 1049 | 1205 | - | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 341 | 554 | IPR027417 | - | |
| Vvi5g1220 | 1405 | SMART | AAA_5 | 368 | 550 | IPR003593 | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 951 | 1005 | - | - | |
| Vvi5g1220 | 1405 | Gene3D | C2 domain | 1340 | 1404 | IPR035892 | - | |
| Vvi5g1220 | 1405 | SMART | Sec63_2 | 807 | 1073 | IPR004179 | - | |
| Vvi5g1220 | 1405 | SMART | Sec63_2 | 1148 | 1393 | IPR004179 | - | |
| Vvi5g1220 | 1405 | CDD | SF2_C_Ski2 | 554 | 697 | - | - | |
| Vvi5g1220 | 1405 | Pfam | N-terminal helicase PWI domain | 202 | 310 | IPR041094 | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 808 | 949 | - | - | |
| Vvi5g1220 | 1405 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1055 | 1207 | IPR027417 | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 660 | 716 | IPR027417 | - | |
| Vvi5g1220 | 1405 | SUPERFAMILY | E set domains | 1346 | 1397 | IPR014756 | - | |
| Vvi5g1220 | 1405 | CDD | DEXHc_Brr2_1 | 337 | 550 | - | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 1059 | 1260 | IPR027417 | - | |
| Vvi5g1220 | 1405 | SUPERFAMILY | Winged helix DNA-binding domain | 714 | 819 | IPR036390 | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 555 | 659 | IPR027417 | - | |
| Vvi5g1220 | 1405 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 549 | 714 | IPR027417 | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 1264 | 1324 | - | - | |
| Vvi5g1220 | 1405 | SMART | ultradead3 | 350 | 562 | IPR014001 | - | |
| Vvi5g1220 | 1405 | Gene3D | - | 717 | 807 | IPR036388 | - | |
| Vvi5g1220 | 1405 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 363 | 546 | IPR014001 | - | |
| Vvi5g1220 | 1405 | MobiDBLite | consensus disorder prediction | 54 | 104 | - | - | |
| Vvi5g1220 | 1405 | Pfam | Sec63 Brl domain | 1211 | 1392 | IPR004179 | - | |
| Vvi5g1220 | 1405 | Pfam | Sec63 Brl domain | 808 | 1022 | IPR004179 | - | |
| Vvi5g1220 | 1405 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 340 | 541 | IPR027417 | - | |
| Vvi5g1220 | 1405 | Pfam | DEAD/DEAH box helicase | 356 | 531 | IPR011545 | GO:0003676|GO:0005524 | |
| Vvi5g1220 | 1405 | SUPERFAMILY | Sec63 N-terminal domain-like | 835 | 1008 | - | - | |
| Vvi5g1220 | 1405 | SUPERFAMILY | Sec63 N-terminal domain-like | 1203 | 1325 | - | - | |
| Vvi5g1220 | 1405 | MobiDBLite | consensus disorder prediction | 24 | 113 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g1220 | K12854 | SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] | - | cpap:110816627 | 1415.98 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1220 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002961 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 3 | 2 | 1 | 3 | 2 | 1 | 3 | 2 | 1 | 2 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 48 |