Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1221 ATGGCCTTGCCCACCCCACCTATACCACCTCCAGTACCTGCCCCGCCAACACCACCTCCACCCCCTGAAGCTGCAAGACCTAACTTGGAAGACCTATCTAGTGGCGAGTCTGAAATGGAATCATCAGATGAGGAGGTTGATGGCAAAGCCTATTCTCCTGGGCCTCCAAGAGAAACAAAACCTGGTCGAAAGCGTGTCAAACGAGAAGCTATTGCAGGCCCTGGAGTTGATAAAGATGTGGCTCATGAGGCTGTTGGAGTGAAACCTGCCACCTTGGTCCCTAAAGAGATTCCAATGATAAAAAAGAAGAACCCTGTGTTGCAGATCAAAATTGCCCCCAAGGTAATCACTGAACATAAAGATGAATGTAGCATCATGAAAGAATCGGAGGATTCTGAGAAAGAGGATTTTGATCTCAAACATTATGCAACCTTGGAAGAATTAAAAAGTGGAAAGTTGCCTCCAGAGGAAATCTTATCACTTCCAATGTTTAAGAACTATGCGGCTGGGAATCCTGCTCCTGTGTTGTACATAAAGAACTTGGCAAAAGATGTGGTTGTAGATGACTTCTATTTCATATTTGGATCATTATTTGGAAGTGTGGATGCTGCTAAATCTGGTCTTAGTGTGAAGTTGATGCAGGAGGGAAGAATGAGGGGCCAAGCTTTTGTGACATTTCCATCAGTTGAACTTGCTCATCATGCTTTGAATGTAGTGAATGGATACGTTTTCAAAGGCAAGCCAATGATTATCCAGTTTGGTCGGAACCCTGCTGCTGCAAAAGAGAAATAA 792 44.19 MALPTPPIPPPVPAPPTPPPPPEAARPNLEDLSSGESEMESSDEEVDGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVITEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAKEK* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22439692 22444842 - Vvi5g1221 Vvi5g1221 787363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1221 263 CDD RRM2_RBM40_like 175 254 - -
Vvi5g1221 263 SUPERFAMILY RNA-binding domain, RBD 154 257 IPR035979 GO:0003676
Vvi5g1221 263 PANTHER UNCHARACTERIZED 1 262 IPR045164 -
Vvi5g1221 263 MobiDBLite consensus disorder prediction 1 26 - -
Vvi5g1221 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 248 IPR000504 GO:0003723
Vvi5g1221 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 256 IPR000504 GO:0003723
Vvi5g1221 263 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 1 262 - -
Vvi5g1221 263 SMART rrm1_1 175 252 IPR000504 GO:0003723
Vvi5g1221 263 Gene3D - 169 263 IPR012677 -
Vvi5g1221 263 MobiDBLite consensus disorder prediction 58 77 - -
Vvi5g1221 263 MobiDBLite consensus disorder prediction 1 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1221 K13157 RNPC3; U11/U12 small nuclear ribonucleoprotein 65 kDa protein - vvi:100247346 457.988
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1221 . . . . . . . . . . . . . . . Cpe08g00016 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003933 0 0 1 0 1 2 1 1 2 0 2 1 1 1 1 1 1 0 1 1 1 0 1 1 2 2 1 8 3 2 39