Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1235 ATGGACTTCGACTTTGCCCATTACATGTTGACTGAAAGGGGGAAAGGCAAAGAGAACCAAAGTGTTAGGTCTCAATCCAAAGAGGCCTACTTGAAACTACTGGCTGAGACATTCAACATGAATCGCTCTCGCATCCTCGCCTTTAAGAACAAACCACCTACTCCAGTAAAATTGATACCAGATGAATTCTATTCTTCTGTTCATCAATCCAAGCCCTCAAAGCCTCTGCGGCGTATTCCTCAGATGCAACAGACTCCTGTGAGGACATTGGATGCTCCTGATATTATAGATGATTTTTGCTTGAACTTAATGGATTGGGGTAGCAGCAATGTTCTCGCACTTGCTCTTCAAAACACGGTATATTTGTGGGATGCTTCAAATGGTTCTGCCTCAGAGCTTGTCACTGTTGATGATGAGAATGGCTCTGTTACAAGTGTGAGTTGGGCTGCTGATGGACAATATATTGCCATTGGCTTGAACAGTTCTGATGTTCAGCTATGGGATTCTACAGCTAATCGGCTGCTGAGGACTCTGAGAGGTGGCCACCAATCACGAGTTGGTTCTCTAGATTGGAAAAACCACATCCTTACAACTGGGGGAATGGATGGTCAGATCATTAACAATGATGTGAGAGCGCACTCGCACATTGTGGCAACTTTTAGAGGACACCGACAAGAGGTTTGTGGACTGAAATGGTCTACCTCTGGCCAACAGTTAGCGAGTGGAGGAAATGACAATTTACTCCACATATGGGATAGGTCGATGGCCTCCATGCATTCACGTTCTCAGTGGCTTCACAGGCTTGAGGATCATACTGCTGCAGTAAAAGCGCTTGCTTGGTGCCCTTTTCAGCGCAATTTGCTGGCTTCTGGAGGAGGTGGGAGTGATGGTTGCATAAAGTTTTGGAACACCCACACTGGCGCATGCTTGAACTCAGTGGACACTGGCTCACAGGTCTGTGCTCTGCTGTGGAACAAGAACGAGCGTGAGTTGCTTAGCTCCCATGGCTTTATGCAGAATCAAATGACCCTCTGGATGTATCCATCAATGGTGAAGATTGCTGAGCTTACTGGTCATACATCCAGAGTTCTTTTCATGGCTCAGAGTCCAGATGGGCGTATAGTGGCAACTGCTGCAGGAGATGAGACTCTCAAGTTCTGGAATGCTTTTGGCACGCCAGAAGTGAAAAAGGCTGCACCAAAAGCAGAGCATCCTGGGCCATTTCCTCATCTAAGGAGAATCCGTTAG 1248 46.88 MDFDFAHYMLTERGKGKENQSVRSQSKEAYLKLLAETFNMNRSRILAFKNKPPTPVKLIPDEFYSSVHQSKPSKPLRRIPQMQQTPVRTLDAPDIIDDFCLNLMDWGSSNVLALALQNTVYLWDASNGSASELVTVDDENGSVTSVSWAADGQYIAIGLNSSDVQLWDSTANRLLRTLRGGHQSRVGSLDWKNHILTTGGMDGQIINNDVRAHSHIVATFRGHRQEVCGLKWSTSGQQLASGGNDNLLHIWDRSMASMHSRSQWLHRLEDHTAAVKALAWCPFQRNLLASGGGGSDGCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFMQNQMTLWMYPSMVKIAELTGHTSRVLFMAQSPDGRIVATAAGDETLKFWNAFGTPEVKKAAPKAEHPGPFPHLRRIR* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22578398 22579963 - Vvi5g1235 Vvi5g1235 787377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1235 415 SMART WD40_4 171 209 IPR001680 GO:0005515
Vvi5g1235 415 SMART WD40_4 213 252 IPR001680 GO:0005515
Vvi5g1235 415 SMART WD40_4 349 388 IPR001680 GO:0005515
Vvi5g1235 415 SMART WD40_4 261 303 IPR001680 GO:0005515
Vvi5g1235 415 SMART WD40_4 129 168 IPR001680 GO:0005515
Vvi5g1235 415 SMART WD40_4 83 124 IPR001680 GO:0005515
Vvi5g1235 415 Gene3D - 41 390 IPR015943 GO:0005515
Vvi5g1235 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Vvi5g1235 415 SUPERFAMILY WD40 repeat-like 79 388 IPR036322 GO:0005515
Vvi5g1235 415 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 413 - -
Vvi5g1235 415 Pfam Anaphase-promoting complex subunit 4 WD40 domain 134 193 IPR024977 -
Vvi5g1235 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Vvi5g1235 415 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 413 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vvi5g1235 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 388 - -
Vvi5g1235 415 Pfam WD domain, G-beta repeat 353 388 IPR001680 GO:0005515
Vvi5g1235 415 Pfam WD domain, G-beta repeat 265 303 IPR001680 GO:0005515
Vvi5g1235 415 Pfam WD domain, G-beta repeat 217 252 IPR001680 GO:0005515
Vvi5g1235 415 CDD WD40 118 388 - -
Vvi5g1235 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 252 IPR001680 GO:0005515
Vvi5g1235 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1235 K03363 CDC20; cell division cycle 20, cofactor of APC complex - vvi:100256145 843.958
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001497 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 2 1 2 3 4 2 2 5 3 6 67