Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1237 ATGCAGAGGAAGAAAGAGAAGCAGAAGAGAAAAGCGGCCAATAAGAGAGACCCACGAAGGCTCAGTGTCAAGGGTAAGAAAAAGAAGCAGAGGTTCGCAAATGCCGAAGAGAGAATCAAGTTCAAGCTTGAAAAGGCAAGAATCAAGGAAGCCTTACTCATTGAAAGACTAAAACGATATGAAGTTCCCAAACTTCAGGGTCCTATAGTTCAACCAGTTAATCTGACGGGTGAGGAGCGGTTCTATATGAAGAAGATGGCCCAGAAGAGGTCTAATTATGTACCAGTTGGCAGACGAGGAGTATTCGGAGGTGTTATTCTCAACATGCACATGCATTGGAAGAAACATGAGACAGTCAAGGTCATTTGCAAGCCATGTAAACCTGGCCAAGTGCATGAGTATGCAAATGAAATTGCCAGATTGAGTGGTGGGACCCCAATTCAGATAATTGGAGATGACACCATAATATTTTACCGAGGAAAAAACTATGTGCAGCCAGAAGTTATGTCGCCAATAGATACATTGTCCAAGAAAAGGGCACTGGAAAAATCTAAGTACGAGCAGTCACTGGAGTCAGTGAGGCGATTCATTGCTATTGCTGAGAAGGAACTAGAGCTCTACTACCGGCATATTGCACTTTATGGTGACCCAAGTGATCGAAATCCCACTTCAATCTTTGACAGCCCCAGCAAATACACGAACGAATCAGGTAAAGAAATGCCCAGAAGGCAAGACTTTGACGTGTCCACCAATGGCTTTTCCTTCTCCCCAGGTCATCTTCCAGATACAGAATCTGATTCCACAGATGAAGAACTAGGACCATCACTATCTGCTAGTGAAGATGATTTAGAAGACGAAAACTCATCCGTAATTGAATTTGATTCTGATGATGAGGATGAGGATGAAGATGAAGATGATGATGACTTTGATTCTGATGGTGAAGAATGTGCAGAAAGCTTTTCAGTCATACAAGAAAGCTCAGGTACAATACTGGGTTGA 999 42.84 MQRKKEKQKRKAANKRDPRRLSVKGKKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPSDRNPTSIFDSPSKYTNESGKEMPRRQDFDVSTNGFSFSPGHLPDTESDSTDEELGPSLSASEDDLEDENSSVIEFDSDDEDEDEDEDDDDFDSDGEECAESFSVIQESSGTILG* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22606843 22611712 + Vvi5g1237 Vvi5g1237 787379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1237 332 ProSiteProfiles CRM domain profile. 73 170 IPR001890 GO:0003723
Vvi5g1237 332 MobiDBLite consensus disorder prediction 247 262 - -
Vvi5g1237 332 Pfam CRS1 / YhbY (CRM) domain 75 159 IPR001890 GO:0003723
Vvi5g1237 332 MobiDBLite consensus disorder prediction 1 28 - -
Vvi5g1237 332 MobiDBLite consensus disorder prediction 218 332 - -
Vvi5g1237 332 Gene3D - 74 178 IPR035920 -
Vvi5g1237 332 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 1 301 - -
Vvi5g1237 332 MobiDBLite consensus disorder prediction 1 31 - -
Vvi5g1237 332 SMART CRS1_YhbY_2 75 159 IPR001890 GO:0003723
Vvi5g1237 332 SUPERFAMILY YhbY-like 74 169 IPR035920 -
Vvi5g1237 332 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 1 301 IPR040286 -
Vvi5g1237 332 MobiDBLite consensus disorder prediction 221 235 - -
Vvi5g1237 332 MobiDBLite consensus disorder prediction 275 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1237 - - - vvi:100250974 618.616
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008602 1 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 3 1 1 1 2 1 34