Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1241 ATGAAGATTCAGTGTGACGTGTGTGAGAGGGCACCAGCTACTGTGATTTGCTGTGCAGATGAGGCAGCACTGTGTGCAAAATGTGATGTTGAGGTCCATGCAGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGCCTCTCCAACAAGCTTCCACCTTGTGACATATGCCAAGAGAAGGCAGCTTTCATTTTCTGTGTTGAAGATAGGGCTCTCTTTTGCCGGGATTGTGATGAACCAATCCATTCAGCTGGTAACCTTGCTGCCAACCACCAGAGGTTTTTGGCCACTGGAATCCGGGTGGCTTTAAGCTCAAAATGTGCCAAGGAGACTGATAAGAGCTCTTCGGAACCACCACCCAATCAGAATTCACAACAGATTACCATGAAAATGCCTCCACAGCAAGCCCCTAACTTTACATCTTCTTCATGGGCTGTTGATGACTTGTTACAGTTTTCGGACTTTGAATCCTCTGACAAGAATAAACAACTTGAGTTTGGCGAGCTTGAGTGGTTGACAGAAATGGGCATCTTTGGTGATCAAGTTCCCCAGGAGGCCATGGCAGCAGCTGAGGTTCCCCAGCTCCCTATTTCACAGCCAAGCTATGGCGCCTCATACAGAGCCACCAAATCCAGCATGCCCTACAAAAGGCCCAGGATCGAAATCCTTGACGACGAGGATGAACACTTCACCGTGCCTGATCTTGGCTGA 720 48.61 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCRDCDEPIHSAGNLAANHQRFLATGIRVALSSKCAKETDKSSSEPPPNQNSQQITMKMPPQQAPNFTSSSWAVDDLLQFSDFESSDKNKQLEFGELEWLTEMGIFGDQVPQEAMAAAEVPQLPISQPSYGASYRATKSSMPYKRPRIEILDDEDEHFTVPDLG* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22643831 22646892 - Vvi5g1241 Vvi5g1241 787383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1241 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi5g1241 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Vvi5g1241 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vvi5g1241 239 MobiDBLite consensus disorder prediction 112 143 - -
Vvi5g1241 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Vvi5g1241 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
Vvi5g1241 239 Gene3D Classic Zinc Finger 1 95 - -
Vvi5g1241 239 CDD Bbox1_BBX-like 5 47 - -
Vvi5g1241 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vvi5g1241 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi5g1241 239 MobiDBLite consensus disorder prediction 117 143 - -
Vvi5g1241 239 CDD Bbox1_BBX-like 56 98 - -
Vvi5g1241 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14825 PF00643 zf-B_box 2.70E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1241 - - vvi:100257595 489.189