Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1249 ATGAAATGGCTATTGAGTTTCGTGGGGGGCTTTGTCGCCTACAGCTTCTTAAAAATGCTGCATGAATACTCTACAAGGAAGGTAAGGGAGGAGGCGTGGAGGATGATGGCAGAGGGGAGAAATGAAGAAGCAAAGGGGATGCGGCACAGAAACTGTACACTGAAGATGATCGACACACCAGATTGGGACACAATAGATTGGGCGGAGGTAGATGACACACGAAATTTGGCGAAGATAGTCTTGTCGAGGGTCATAGAGAAACTCTATGTTGTGCGGATTCAAGAACCAGCAGTTTTGGTTGGAGTTGAAGAAGAGGTCCAATGGATCCAAAGGGAGTTGATGGGCGCTCGGGTAAAATATAGTTATGCCCCAGAGGAATTAATGGATGTTGCCTATGATTTTGAAGATGTGATTGATGACCTTATACTCAGATCAGCTGCAAAGCAAAGGGGAATAGGAAATTGGGAGAGGTGCCTTTTGTCAATCAGAATTCATAAGAAGCTGGAATTGATCAAGTCTAAGATCCCTTCTCTTCCTCATCTCCCGATCGCAACAGGTTCCAGCTATGATAACTACATCGAAGAAATGGTCTGGTCAGACATCTTCTTGATACAGGGTCGGAGTGTGGCAATCACGATTGTTTCCCCGGTGGAAGAGAAGGTATCAGCTCTGCTAGCTCTAGAGGCAATTCATCCCTATACTAAGAAGAAGGTCATGCGGGCACTAGACAAATTCAGGTCTCTGAATGATTTTCTGACAGGCTTACAATCAGTAGAATTAGACGATTGCGGAATGGTTTGGATGGAGGAGCTGTCCCATGTTGCCCTGTCTGCTGCAATAGCCATTGAGGACCTCATCAATAAAGAAGAACAGTTCACAAAAAGAAGTTGGATGAGACCTTCCAGGGGATTTCTTTCTGCTTTTGGAAAATTGAAATCTGAGGATAAGCTTTCTGTGGAGATGGACAAAATATATGCTAAGATTCAGAACCTCTCTATGCACAGGCCAACAGAATTCAGTAGACAATGTCAAAGTAGGGACACAAAGTCCACCATGCCAATCCCACCACAGCCAACAGCACAAGAACCTGATCTCGCCAGCTTCAGTGATGATGTACATGCAATGATAACACGGTTGCTTACTGATGACAAGAGATTCAGAGTGATTCCAATTATGGGTATGGAAGGCATTGGAAAGACAACCCTAGCAAAGTTGATATTTAACCATAAAGCTGTTGTAGATCATTTCCCCTTTGCTGTTTGGACGTCAGATGGCTGTCGACTTCACCTACGTAACAAGGAAAATTTGATGGAGTTCGACCTAGATCAACTGGGAGATTTGTGGAGTTATGATGAGGAGAGGCACCCGCTGAAACCTTTCTTGATTGATAACAGGTCTCTCGTAGTTTTGGATGATCCCCACTTCTTGTACGAGGTGTTAATGGTACTTCCAGATACATCAAATGGGAGTAGAATGATTTTGACTACTTGCGATATGAGGCTACCTTCAAAACTCGAAAGGAAGAGTGATCCACATCCACTACGGTTACGTACAGATGAGGAGAGCTGGGCATTGTTTACCCATGCTTTGAAGGTGAGCATACCCCCAGAACTGCTAAAGCTGAAAGAAGAAATTGTAAAAAGATGTGGGGGGCTACCACTGCTGATTGTAAAATTTGCAGAAGCACTCTCACACAAGGATGCAACCATTGAAGAGTGGTCCACTGCACTTCTACAGTGTCCTCATGACCAGCAGCAACTTTGGTCCAATACCCTCTGCAATATCCATAAGGATTTGTCCTTGTACATGAGGAGATGTCTATTTCATTTCACTTTATTTCCTCAAGATTTTGATATTCCTGCAAGAAGGTTGATAAGATTGTGGGTTGCAGAGGATTTGGTGCAACCAGAGGGCGAGAATGAAGCTCCAGAAGATGTTGCAGAGAGGTGTTTGAATCTGTTTATAGCCCAGGGAATGATTCAAGTAACAAAGAAGAAGTTTAATGGGAAGGTGAAAGCGATTCGCCTGCCAGATACCCTAAGACAATACTGGTTGTCCAAAGCTCAACAAGCCACATTTCTTGGAGTTCATACTAACACAAGATCAGAGATGTCCCTAGGCACCAACAAGATTCGCCGTCTTGTTGATCATCTTGACAGAGAAGATATAAGTTTCGGTCATATTCATGGTGATTACAACACAACTACTTCTTTGACACCTTTCTATGAAGATGTACTTTCTTTTCTATCCTTTGATACTAGAAAAGAAAGCAAACCAGGAGAAGAAGTAGGGAACTTTCTCCATCGATGCGTATCTAGGGGTTGCTTCCTAGTACTGTTGGTGCTTGATCTTGAAAATGTATTCAGACCTAAGTTACCCGAGGCAGTTGGTGAACTAACTCGACTAAGGTACCTTGGCTTGAGATCTACATTCCTCGAGATAATTCCATCTTCCTTAAGCAAGTTGCAGAATGTTCAAACACTAGACATGAAGCATACTAGCATCAGCACCCTTCCTAATTCAATCTGGAAGCTACAAAAATTGCGTCACTTATACTTGAGTGAGAGCTACCGAAGTAAACTTATGCTTCGACATGGTACCAATTCTCTTACAACCCTCCAAACATTATGTGGGTTATTTATAGATGAGGAGACTCTGGTAAGAGATTGCCTAGATAGGTTGCTTGATATTAAGAAATTGGGATTAACAATGTCATCTAAACAAGAGGCAGTGTCATTAAGCTTGCAGGCAGTCGCTGATTGGATCTCGAAACTAAACCAACTCCATTCTTTAAGGCTCAAATCTATTGATAAAAGCAATCAGCCATGGGATCTAGAATTGAAGCCTTTAGTAGGCCATGTGAATCTTTCTTGCATTTACTTGCTGGGGCGGTTAAGGAATCCATCTATTATTTCCCAATTCCCATACAGCCTCATCGACCTCACCTTATCAGGGTCAGGACTTGCAGAAGATCCAATGCAGTCATTGGATAAGCTTCCAAACCTTAGAAGTCTTAAATTGTTTGCCAAATCTTATTTAGGGAAGAACATGCTCTGCTCTTTAGGAGGCTTTCCTCAGCTTCGAGCTCTTAAACTATGGAAGTTAGAGCAACTGGAAGAATGGAATGTAGACAAAGGAGCACTACAAGATCTCCGAGATTTGGAGATCAGGTTCTGCAGAAGTTTGAAAATGCTTCCCGTAGAACTGCTACACAGAACTCTCTTGAAAATTGAAGTTATACCTGCCCAGTAA 3252 42.74 MKWLLSFVGGFVAYSFLKMLHEYSTRKVREEAWRMMAEGRNEEAKGMRHRNCTLKMIDTPDWDTIDWAEVDDTRNLAKIVLSRVIEKLYVVRIQEPAVLVGVEEEVQWIQRELMGARVKYSYAPEELMDVAYDFEDVIDDLILRSAAKQRGIGNWERCLLSIRIHKKLELIKSKIPSLPHLPIATGSSYDNYIEEMVWSDIFLIQGRSVAITIVSPVEEKVSALLALEAIHPYTKKKVMRALDKFRSLNDFLTGLQSVELDDCGMVWMEELSHVALSAAIAIEDLINKEEQFTKRSWMRPSRGFLSAFGKLKSEDKLSVEMDKIYAKIQNLSMHRPTEFSRQCQSRDTKSTMPIPPQPTAQEPDLASFSDDVHAMITRLLTDDKRFRVIPIMGMEGIGKTTLAKLIFNHKAVVDHFPFAVWTSDGCRLHLRNKENLMEFDLDQLGDLWSYDEERHPLKPFLIDNRSLVVLDDPHFLYEVLMVLPDTSNGSRMILTTCDMRLPSKLERKSDPHPLRLRTDEESWALFTHALKVSIPPELLKLKEEIVKRCGGLPLLIVKFAEALSHKDATIEEWSTALLQCPHDQQQLWSNTLCNIHKDLSLYMRRCLFHFTLFPQDFDIPARRLIRLWVAEDLVQPEGENEAPEDVAERCLNLFIAQGMIQVTKKKFNGKVKAIRLPDTLRQYWLSKAQQATFLGVHTNTRSEMSLGTNKIRRLVDHLDREDISFGHIHGDYNTTTSLTPFYEDVLSFLSFDTRKESKPGEEVGNFLHRCVSRGCFLVLLVLDLENVFRPKLPEAVGELTRLRYLGLRSTFLEIIPSSLSKLQNVQTLDMKHTSISTLPNSIWKLQKLRHLYLSESYRSKLMLRHGTNSLTTLQTLCGLFIDEETLVRDCLDRLLDIKKLGLTMSSKQEAVSLSLQAVADWISKLNQLHSLRLKSIDKSNQPWDLELKPLVGHVNLSCIYLLGRLRNPSIISQFPYSLIDLTLSGSGLAEDPMQSLDKLPNLRSLKLFAKSYLGKNMLCSLGGFPQLRALKLWKLEQLEEWNVDKGALQDLRDLEIRFCRSLKMLPVELLHRTLLKIEVIPAQ* 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22819170 22824151 - Vvi5g1249 Vvi5g1249 787391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1249 1083 Gene3D - 518 597 IPR042197 -
Vvi5g1249 1083 MobiDBLite consensus disorder prediction 337 362 - -
Vvi5g1249 1083 PANTHER DISEASE RESISTANCE PROTEIN RP 71 1082 IPR044974 GO:0006952
Vvi5g1249 1083 MobiDBLite consensus disorder prediction 337 355 - -
Vvi5g1249 1083 PANTHER - 71 1082 - -
Vvi5g1249 1083 PRINTS Disease resistance protein signature 388 403 - -
Vvi5g1249 1083 PRINTS Disease resistance protein signature 460 474 - -
Vvi5g1249 1083 PRINTS Disease resistance protein signature 549 563 - -
Vvi5g1249 1083 PRINTS Disease resistance protein signature 1046 1062 - -
Vvi5g1249 1083 Pfam Leucine rich repeat 801 854 IPR001611 GO:0005515
Vvi5g1249 1083 Gene3D - 598 688 IPR036388 -
Vvi5g1249 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 608 IPR027417 -
Vvi5g1249 1083 Gene3D - 344 510 IPR027417 -
Vvi5g1249 1083 SUPERFAMILY L domain-like 775 1076 - -
Vvi5g1249 1083 Pfam NB-ARC domain 370 599 IPR002182 GO:0043531
Vvi5g1249 1083 Gene3D Ribonuclease Inhibitor 752 1078 IPR032675 -
Vvi5g1249 1083 CDD RX-CC_like 77 175 IPR038005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1249 - - - vvi:104879463 2160.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1249 . . . . . . . . . . . . . . Sed02g1027 . . Bhi01g02658 Tan10g1276 Cmetu07g1550 . . . Lcy11g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9