Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1250 ATGGAGGACTGGCCTAGGGACAACCGGAGCAGGCTAGGACAGGGGAAGTTGGAGTTTGTGGATGAAGTTTTCGGCCCTGAATCTTTGGAGTTTGATATTTTTGGGCGTGGCCCTTACACTGGATTAGCCGATGGCCGGATTGTGAGGTGGATGGGAGATAGTGTTGGGTGGGAAACATTTGCGCTTGTGACACCAAACTGGTCAGAGAAGCTATGTGCCAAGGGCATTGACTCAACAACCTCTAAGCAATGGAAGGTAGAGCAAAGGTGCGGTCGCCCCCTTGGCCTAAGGTTCCACAAAGAGACTGGAGATCTGTACATAGCCGATGCTTATTACGGCCTCTTGGTTGTGGGACCTGAAGGTGGTCTTGCTACTCCTCTAGTGACTCATGTTCAAGGGAAGCCAATACTCTTTGCAAATGACCTCGACATCCACAAGAATGGATCCATATTTTTCACAGATACTAGCAAGAGATACAACAGAATGAACCATTTCTTTATATTGTTGGAAGGAGAAGCCACTGGTAGGCTTCTGAGATATGATCCTCCTACTAGAACAACTCACCTTGTCTTGGATGGTTTGGCTTTCCCCAATGGAGTACAGTTATCTGGGGACCAGAGCTTTCTCCTCTTCACTGAGACTACTAATTGCAGGCTAATGAAATACTGGCTAGAAGGTCCAAAATCCGGAATCGTGGAACTTGTAGCCAACCTGCCAGGTTTTCCAGACAATGTCAGGCTAAACGAAAGAGGCCAATTTTGGGTTGCCATAGATTGTTGCAGAACTCCAGCACAGGAGGTTTTAACTCACAATCCATGGTTGAAAAACATCTACTTCAGGTTGCCAGTAAAGTTGAGTATGTTGGCCAGGTTGATGGGGATGAAGATGTACACGGTCATCTCTCTGTTCAATGAGAAGGGAGAGATACTAGAAGTTCTTGAAGATCGAAAAGGCCTTGTGATGAGGCTGGCCTATTCCATTGTCAATACCAGCCTTGTCCTCATTGAAAATTTCATTTCTGCAATTATATTTTTCAGTATTAATTGTGACAATTGTATTTTTGCAGGTCCAAACCTTTCATATGTTAATCTACAATAG 1098 44.99 MEDWPRDNRSRLGQGKLEFVDEVFGPESLEFDIFGRGPYTGLADGRIVRWMGDSVGWETFALVTPNWSEKLCAKGIDSTTSKQWKVEQRCGRPLGLRFHKETGDLYIADAYYGLLVVGPEGGLATPLVTHVQGKPILFANDLDIHKNGSIFFTDTSKRYNRMNHFFILLEGEATGRLLRYDPPTRTTHLVLDGLAFPNGVQLSGDQSFLLFTETTNCRLMKYWLEGPKSGIVELVANLPGFPDNVRLNERGQFWVAIDCCRTPAQEVLTHNPWLKNIYFRLPVKLSMLARLMGMKMYTVISLFNEKGEILEVLEDRKGLVMRLAYSIVNTSLVLIENFISAIIFFSINCDNCIFAGPNLSYVNLQ* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22843171 22845524 + Vvi5g1250 Vvi5g1250 787392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1250 365 SUPERFAMILY Calcium-dependent phosphotriesterase 15 325 - -
Vvi5g1250 365 Gene3D - 11 331 IPR011042 -
Vvi5g1250 365 PANTHER STRICTOSIDINE SYNTHASE-RELATED 6 327 - -
Vvi5g1250 365 Pfam Strictosidine synthase-like, N-terminal 23 50 - -
Vvi5g1250 365 Pfam Strictosidine synthase 140 226 IPR018119 GO:0009058|GO:0016844
Vvi5g1250 365 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 13 6 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1250 - - - vvi:100242221 672.544
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1250 . . . . . Bpe14g01059 . . . . . Cma14g01516 . Car14g01340 . . . . . . . . . . . . . . . . . . . Cone18ag0850 . . . . . Blo02g00445 . . . . . . . . . Cmo14g01550 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012010 0 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30