Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1254 ATGCTCAAGCTCGCCGAACTTCTTTCCCTCGCCGGCCTCCGCATCACCTTCCTCAACTCCGACTACAACCACCACCGCCTCCTCCGTTACACAAATATTCTGGATAGATACACGCGCTATCCTGGCTTCCGTTTCCAAACAATCTCCGATGGGTTGCCATTGGATCGTCCGTGGACTGGTGCCGGATTGAGGGATATGATGGATGGAATAAAAGCCACGACCAAACCACTGTTTAGGGAGATGGTAATTTCGTGGTGCCAGAGTTCCGACCCGGTGACCTGCATCATAGCAGATGGGCTCATGAGTTTTGCCATTGATGTTGCCAATGAAGTTGGAGTTCCCATCATTTCTTGCCGTACTGTCAGTCCTTGTTGCTTCTTGGCATATTTCTCTTTCGCCGAACTCATTGAAGCAGGGGAAGTCCCCTTTAAAGATGATGATATGGATCGGCTAGTAACCAGAGTGCCGGGAATGGAGGGGTTTCTCCGGCGGCGAGATCTACCTAGTTTTTGCCGTACCAGGGATGCAAATGACCGCGGAATCCAGTTTATAATCACGGAGACTCAACAAACCCCACGAGCCCATGCCCTCATACTGAATACATTTGAAGACCTAGACGGACCCATACTCTCTCAAATACGCAATCACTGCCCAAAAATCTACACCATTGGACCTCTCCACGCACATCTCAAATCCAGGCTTGCATCCGAAACAACCACGTCACAGTTTTCCAACAGTTTCTGGGAGGAAGACAGAAGCTGCTTAGCGTGGCTTGATCGCCAGCCATCAAAATCTTTCATCTACGTCAGCTTCGGAAGCATCACGGTCATCACAAAGGAGCAGATGATGGAGTTCTGGCACGGTCTAGTCAACAGCGGGAGTCGCTTCTTGTGGGTCATACGGCCAGACTCCCTCACAGAAAAAGATGGAGACGCACCCGGCTGTGGGTGGGTTCCTAACTCACGGTTCGTGAGCCATGTTTGGAAGATAGGTATGGATATGAAGGACACTTGCGATAGAGTTACTGTTGAAAAGATGGTGAGAGATGTAATGGAAGAGAGAAGAGCCGAGTTCACCAAATCGGTAGATGCCATGGCAAAATTGGCAAGAAGTAGCCTGAGTGAAGGTGGGACCTCCTACTGTAACTTTAACCGTTTGATCGAGGATATTAGGTTGATGAGCGCCTCATAG 1191 49.71 MLKLAELLSLAGLRITFLNSDYNHHRLLRYTNILDRYTRYPGFRFQTISDGLPLDRPWTGAGLRDMMDGIKATTKPLFREMVISWCQSSDPVTCIIADGLMSFAIDVANEVGVPIISCRTVSPCCFLAYFSFAELIEAGEVPFKDDDMDRLVTRVPGMEGFLRRRDLPSFCRTRDANDRGIQFIITETQQTPRAHALILNTFEDLDGPILSQIRNHCPKIYTIGPLHAHLKSRLASETTTSQFSNSFWEEDRSCLAWLDRQPSKSFIYVSFGSITVITKEQMMEFWHGLVNSGSRFLWVIRPDSLTEKDGDAPGCGWVPNSRFVSHVWKIGMDMKDTCDRVTVEKMVRDVMEERRAEFTKSVDAMAKLARSSLSEGGTSYCNFNRLIEDIRLMSAS* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22907017 22908789 + Vvi5g1254 Vvi5g1254 787396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1254 396 Gene3D Glycogen Phosphorylase B; 373 387 - -
Vvi5g1254 396 PANTHER GLYCOSYLTRANSFERASE 1 311 - -
Vvi5g1254 396 PANTHER GLYCOSYLTRANSFERASE 320 393 - -
Vvi5g1254 396 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 390 - -
Vvi5g1254 396 PANTHER 7-DEOXYLOGANETIC ACID GLUCOSYLTRANSFERASE-LIKE ISOFORM X1 1 311 - -
Vvi5g1254 396 Gene3D Glycogen Phosphorylase B; 242 315 - -
Vvi5g1254 396 Gene3D Glycogen Phosphorylase B; 1 241 - -
Vvi5g1254 396 PANTHER 7-DEOXYLOGANETIC ACID GLUCOSYLTRANSFERASE-LIKE ISOFORM X1 320 393 - -
Vvi5g1254 396 Gene3D Glycogen Phosphorylase B; 320 372 - -
Vvi5g1254 396 CDD GT1_Gtf-like 1 390 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1254 - - - vvi:100266253 746.117
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000021 5 17 7 7 3 17 0 19 18 19 14 15 15 14 14 23 17 21 4 16 18 8 11 15 18 23 14 16 17 12 417