Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1260 ATGAAGAGTGATCCTCACCCACTGCGGTTACGGACAGATGAGGAGAGTTGGGCATTGTTTACCCATGCTTTGAAATTTAGCATACCCCCAGAATTGCTAAAGCTGAAAGACGAAATTGCAAAAAGATGTGGGGGACTGCCACTGCTGATTGTAAAATTGGCGGAAGCACTCTCACATAAGGATGCAACCATTGAGGAGTGGTCCACTGCACTTCAACAATTTCATCATGACCAACAGCAACTTTGGCCCAATACCCTCTACAAGATCCATAAGGATTTGTCCTTGTACATGAGGAGATGTCTATTTTATTTCACTCTATTTCCTCAAGATTTTGATATTCCGGCAAGAAGATTGATAACATTATGGGTTGCAGAGGACTTGGTACAGCCAGAGGGCGAGAATGAAACTCCAGAAGATGTTGCAGAAAGGTGTTTGAATTTGTTGATAGCCCAGGGAATGGTTCAAGTGACAAAGAAGAAGCTTAATGGGAATGTTAAAATGGTGCGATTGCCAGAAGCCCTAAGACAATATTGGTCATCCAAAGCTCAACAAGCCACATTTCTTGGAGTTCATACTAACACAAGATCTGAGTTGTCCCTAGGCACCAATAAGATCCGTCGTCTCGTTGATCATCTTGACAAAGAAGATATCAGCTTTGACCATATTCATGGTAATCACAACACAACTTCTAGTACTTCTTTGACACCTTATTACGAAGATGTACTTTCTTTTCTGTCCTTTGATACTCGAAAAGAAAGCAAACCAGGAGAAGAAGTGGGAAACTTTCTTCGTCAAAGCATATCCAGTGGTTGCTTCCTAGTACTGCTCGTGCTTGATCTCGAAAATGTATTCAGACCAAAGTTACCTGAGGCAATGGGCAAACTTACTCGACTAAGGTACCTTGGCTTAAGATCTACATTCCTCGAGATACTTCCATCATCTATAAGCAAGTTGCAGAATGTTCAAACACTGGACATGAAGCATACTTGCATCAACACTCTTCCTAATTCAATCTGGAATCTACAACAATTGCGACACTTACACTTGAGTGAGAGTTGTCGAAGTAAACTTATCCTTCAACATGATGCAAATTTTCCTACAATCCTCCAAACATTGTGTGGGCTTCTTGTAGATGAGGAGACTCCCGTAAGAGATGGCCTAGACAGGTTACTCAATATTAGGAAATTGGGACTGACAATATCATCTAAACAAGAGGCAATAACATTGCAACTGCAGGCAGTAGTTGACTGGGTTCTAAAACTGAACCAACTCCGCTCTTTAAGGCTCAAATCTATTGATGAAAGCAATCAGCCATGGGATCTAGAGTTGAAGCCTTTAGTAAGCCTTGTGAATCTTTCTTACATTTACTTGCTCGGACGGTTAAGGAATCCATCCATTATGTCCCAATTCCCATACAGCCTCATCGACCTCACCTTATCAGGGTCAGGACTTGTAGAAGATCCAATGCAGTCACTGGATAAGCTTCCCAACCTTAGAAGTCTTAAATTGCTTGCCAAATCTTATTTAGGGAAGAACATGCTTTGCTCTTTAGGAGGCTTTCCTCAGCTTCGAGTTCTTAAACTATGGAAGTTAGAGCAACTGGAGCAATGGAATGTAGAGAAAGGAGCACTACAAGCTCTCCGAGATTTGGAGATTAGGTTCTGCAGAAGTCTGAAAATTCTTCCTGCAGAATTGCTACATAGAACTCTCTTGAAAATTGAAATTATATCTGCCCAGTAA 1740 41.38 MKSDPHPLRLRTDEESWALFTHALKFSIPPELLKLKDEIAKRCGGLPLLIVKLAEALSHKDATIEEWSTALQQFHHDQQQLWPNTLYKIHKDLSLYMRRCLFYFTLFPQDFDIPARRLITLWVAEDLVQPEGENETPEDVAERCLNLLIAQGMVQVTKKKLNGNVKMVRLPEALRQYWSSKAQQATFLGVHTNTRSELSLGTNKIRRLVDHLDKEDISFDHIHGNHNTTSSTSLTPYYEDVLSFLSFDTRKESKPGEEVGNFLRQSISSGCFLVLLVLDLENVFRPKLPEAMGKLTRLRYLGLRSTFLEILPSSISKLQNVQTLDMKHTCINTLPNSIWNLQQLRHLHLSESCRSKLILQHDANFPTILQTLCGLLVDEETPVRDGLDRLLNIRKLGLTISSKQEAITLQLQAVVDWVLKLNQLRSLRLKSIDESNQPWDLELKPLVSLVNLSYIYLLGRLRNPSIMSQFPYSLIDLTLSGSGLVEDPMQSLDKLPNLRSLKLLAKSYLGKNMLCSLGGFPQLRVLKLWKLEQLEQWNVEKGALQALRDLEIRFCRSLKILPAELLHRTLLKIEIISAQ* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23035015 23036755 + Vvi5g1260 Vvi5g1260 787402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1260 579 PANTHER - 4 578 - -
Vvi5g1260 579 Pfam Leucine rich repeat 297 350 IPR001611 GO:0005515
Vvi5g1260 579 Gene3D - 92 182 IPR036388 -
Vvi5g1260 579 PANTHER DISEASE RESISTANCE PROTEIN RP 4 578 IPR044974 GO:0006952
Vvi5g1260 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 103 IPR027417 -
Vvi5g1260 579 Gene3D - 12 91 IPR042197 -
Vvi5g1260 579 Pfam NB-ARC domain 3 100 IPR002182 GO:0043531
Vvi5g1260 579 Gene3D Ribonuclease Inhibitor 248 575 IPR032675 -
Vvi5g1260 579 SUPERFAMILY L domain-like 270 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1260 - - - vvi:100852897 1150.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9