Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1267 ATGGAAGTGGCAGCAAGCATTCTGTCCAGGGTGACAGAGAGGCTCTCTCTTCTGGTAGTTCGAGAACCAGCAGTTTTGATTGGAGTGGCAGAACCGATTGAATGGATTGAGTGGCAATTGAGGACTTGGGCTCCTGATCATTTATGCTACTTCACAGAGAAATTAGTGGACATTGCTTATGCTATTGAGGATATTATAGACGACCTTATATTCAAAGTAGCAGTACAGGGAAGGAGAAGAGGAGTTCTTGAGCAGTTGGTTTTATTCATCAGAAATTTGATTGATCAACATATAATTCACAAGAAGTTGGAAGGGATCAAGGTTAGGATCTCCAGTCTCCAAAGAACAAGAGTTTTTCAAGGTGCTATATCCATTGAAGAAATAGACTGGTTGATATCAACACACCATCAGAACATGGCCAACACAGTTGCTTCCCCTGTTATTGAGAAAATTACAGCCCTGCTAGCTCAGGAGGCACTTTATTCTGAAGTGAAAAAGAGGGCCAGACGGATACAAGATGAATTCAGGTTCCTGGATGGTTTTCTGAAAAACTTAGAATCAAAAGAATTAGATGATAAAGGAATGGTTTGGATGGAGGAACTCTGCCAAGTTTCCTGTTCTGCAGTGGATGTAATTGGGCTTTTCATCAACAGAAGAGAACAGCTTGGAAGGAGCTGGATTGGACCTTTGAGGAGAGTTGTTTTGGCTTTTGACAGTTTGAGATCCCAACATAAGCTTGGCATGGAGATGGACAAAATCAAAGCTAAACTCCTGGATATCTCTACATGGAGACCAAGAGATGTCTCTAAACAACGTCAATGGAGAGTTCCAGAGTCTACATTCAGAGTACTGCAACAGCCATCACAAGAGGCCGATATTATCAGCTTTGATGATGATGTACATGCAATGATGACACGGTTGCTTTCAGATGACAAAGATTTCTGTGCTATTTCAATTGTGGGCATTGAAGGCATTGGTAAGACCACTCTAGCAAAGTTGGTCTATGACCATGATGCTATTGTGAATCATTTCCCTTATCGCGTTTGGACATCTGCATCTGATGGTCCATTTTCATCTGATCCTTTGACAAACATAATGACAGACGAAATGAGACAGGTGCTCAAGGCTTTCCTGGCTGATAAGAGGTTTCTCATAGTTGTGGATGATTTCATCCAGGACCATATCTTGGAAGAATTTGTTACAGCATTCTTGAACACATTGAGAGGCAGCAGAATAATTTTGACCACCCGGGGAACAACACCTTCATATACAAAAGCAAGGAGTCCACCTTCATATCTTAAGACTATGAGTGTTCATCATGGACTGCGGTTACGAGGAGATGATGAGAGCTGGGCATTGTTTACCCATGTGATGAAGGTAAACATACCACCAGAACTGCTAGAACTGAGAAGGGAAATTGTGATAAGATGTGGGGGCTTGCCATTGGCGATTGTAAGATTGGCAGATGTTCTGTCACAGAAGGATGCAAACATTGATGAGTGGTCCAGTGTGCTTCAGCAACTCGACCAAGACCAAGAACAAGTTTGGTCCAAGGCCTTATCTAAAATCAGTGAGGATTTGCCCTTGTACAAGCAGCGTTGTCTCTTTTATTTTGGATTGTTTCCTAAAGATTATGAGATCCCAGTAAGAAGGTTGATCATGTTATGGGTTGCAGAGGGCTTGGTGCAGCCAGAGGTTGAGAATGAAGATCCAGAAGATGTTGCAGGGAGGTGTTTGATAGAGTTGATAGCTGAGGACGTGGTTCAAGTGACAAAGAAGAAGCTTGATGGGAATGTGAAAACATGTCGTCTGCCCTATGCCCTACGGCAACACTGGTTATCAAAAGCTCAGCAGGCCACATTTGTTCAGGTTTATGCCAAGACAAGATCGGAGTTGTCCATAAGCACTGGTTTAGTCCGCCGCCTTGTTGATCATCTTGACAAAGAAGATTTCAGCTTTGATCACATCCATGGTGACTACAGCAGAATTTCCACATCTTTGAGACCTCATTATCAAGGTGTCGTATCCTTTATATCATTTGATTCTCAAGAAGGAAACAAACCAGGAGAAGACATAGGAAAATTTCTTCATCAATGCATTTCTAGCAGTTGCTTTCTACTACTACGGGTGCTTGATCTTGAACATGTATTTAGACCTAAGTTGCCTGAAGCACTTGGTAAGCTAACTCGACTGAGGTACCTTGGCTTGAGGTGGACGTTTTTGGAGATGCTTCCGTCATCCATACGCAAGTTGCAAAATCTTCAAACATTGGATTTGAAGCATACTTACATCAGCACTCTTCCTAGTTCAATTTGGAAGATGCAGCATCTAAGACATTTGCTCTTAAGTGAGAGTTACCGGAGTAGATTTACACTTCAACCAAGAGTTTGTTCTCTAATAGCTCTTCAAACCTTGTGGGGATTGTTTGTAGATGAGAAGACTCTGGTTAAGGGTGGCCTGGACAGGTTGGTGAATGTTAGAAAATTGGGACTGGCATGCCGGTTAATGCCATCCCAACAGCAGACAATGTTATCACAACTGGAGGCAGTGGCTAACTGGGTTCTAAAATTGAAACATCTTCATACTTTAAGGCTGAAATCGGATGATGAAGAGAATCAACCTTGGGATCTAGACTTGAAGCCTTTATTAGCCCATGTCAATCTCTCTAGTATCTACTTGTTGGGAAGGTTGAAGAACCCATCTATTGTATCTGAGTTCCCACGGAGTCTCTCTGACCTTACCCTATCAGGGTCAGGACAAATGGAAGATCCAATGCTAAAATTGGATAAGCTTCCCAACCTAAAAATTCTTAGGTTGTTAGCCAAATCCTATACAGGAAAGCTCATGCTCTGCCCCTCAGGAAGCTTTCCACAGCTTCGAGTTCTTAAACTATGGAAGCTAGAGCAACTGGAGGAATGGAATGTTGAGGAAGGAGCACTGCAGGCTCTGAGAGATTTAGAGATAAGGTCCTGTATAAGGTTGAAGATGCTTCCCAAAGAATTGCTACATAGGAGCTTGTTGGAATTGAAGTTGACAGACATGCCTAGTCAGTTCACTGCATAG 3063 42.51 MEVAASILSRVTERLSLLVVREPAVLIGVAEPIEWIEWQLRTWAPDHLCYFTEKLVDIAYAIEDIIDDLIFKVAVQGRRRGVLEQLVLFIRNLIDQHIIHKKLEGIKVRISSLQRTRVFQGAISIEEIDWLISTHHQNMANTVASPVIEKITALLAQEALYSEVKKRARRIQDEFRFLDGFLKNLESKELDDKGMVWMEELCQVSCSAVDVIGLFINRREQLGRSWIGPLRRVVLAFDSLRSQHKLGMEMDKIKAKLLDISTWRPRDVSKQRQWRVPESTFRVLQQPSQEADIISFDDDVHAMMTRLLSDDKDFCAISIVGIEGIGKTTLAKLVYDHDAIVNHFPYRVWTSASDGPFSSDPLTNIMTDEMRQVLKAFLADKRFLIVVDDFIQDHILEEFVTAFLNTLRGSRIILTTRGTTPSYTKARSPPSYLKTMSVHHGLRLRGDDESWALFTHVMKVNIPPELLELRREIVIRCGGLPLAIVRLADVLSQKDANIDEWSSVLQQLDQDQEQVWSKALSKISEDLPLYKQRCLFYFGLFPKDYEIPVRRLIMLWVAEGLVQPEVENEDPEDVAGRCLIELIAEDVVQVTKKKLDGNVKTCRLPYALRQHWLSKAQQATFVQVYAKTRSELSISTGLVRRLVDHLDKEDFSFDHIHGDYSRISTSLRPHYQGVVSFISFDSQEGNKPGEDIGKFLHQCISSSCFLLLRVLDLEHVFRPKLPEALGKLTRLRYLGLRWTFLEMLPSSIRKLQNLQTLDLKHTYISTLPSSIWKMQHLRHLLLSESYRSRFTLQPRVCSLIALQTLWGLFVDEKTLVKGGLDRLVNVRKLGLACRLMPSQQQTMLSQLEAVANWVLKLKHLHTLRLKSDDEENQPWDLDLKPLLAHVNLSSIYLLGRLKNPSIVSEFPRSLSDLTLSGSGQMEDPMLKLDKLPNLKILRLLAKSYTGKLMLCPSGSFPQLRVLKLWKLEQLEEWNVEEGALQALRDLEIRSCIRLKMLPKELLHRSLLELKLTDMPSQFTA* 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23193192 23196309 - Vvi5g1267 Vvi5g1267 787409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1267 1020 Gene3D - 523 615 IPR036388 -
Vvi5g1267 1020 SUPERFAMILY L domain-like 698 1016 - -
Vvi5g1267 1020 Gene3D - 276 421 IPR027417 -
Vvi5g1267 1020 Pfam Leucine rich repeat 730 783 IPR001611 GO:0005515
Vvi5g1267 1020 Pfam NB-ARC domain 298 522 IPR002182 GO:0043531
Vvi5g1267 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 537 IPR027417 -
Vvi5g1267 1020 PRINTS Disease resistance protein signature 316 331 - -
Vvi5g1267 1020 PRINTS Disease resistance protein signature 377 391 - -
Vvi5g1267 1020 PRINTS Disease resistance protein signature 477 491 - -
Vvi5g1267 1020 PRINTS Disease resistance protein signature 749 765 - -
Vvi5g1267 1020 CDD RX-CC_like 147 261 IPR038005 -
Vvi5g1267 1020 Gene3D - 144 247 - -
Vvi5g1267 1020 PANTHER DISEASE RESISTANCE PROTEIN RP 3 1019 IPR044974 GO:0006952
Vvi5g1267 1020 CDD RX-CC_like 4 113 IPR038005 -
Vvi5g1267 1020 Gene3D Ribonuclease Inhibitor 681 1019 IPR032675 -
Vvi5g1267 1020 Gene3D - 446 522 IPR042197 -
Vvi5g1267 1020 PANTHER - 3 1019 - -
Vvi5g1267 1020 Pfam Rx N-terminal domain 144 221 IPR041118 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1267 - - - vvi:104879469 1873.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015255 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9