Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1269 ATGCCCGATAACCCGCCAAAGAATCTGGGTCACCGGCGTGCCCATTCCGAGATTCTTACTCTTCCCGATGACCTTAGTTTTGATAGTGATCTTGGCGTGGTGGGTGGCGCTGACGGGCCTTCGTTCTCAGATGAGACCGAAGAGGACTTATTTTCTATGTACCTTGATATGGATAAGTTGAATTCCTCTTCTGCAACATCGTCATTTCAAATGGGTGAGCCATCTTCTGCGGCCCCACTGGGATCCGCTTCGGCAGCAATGACTGAGAATGTAGTTGCTCGGCCTAATGATAGGCGAGTTAGGCATCAGCATAGCCAGTCCATGGATGGGTCGACCAGCATTAAGCCTGAGATGCTCATGTCGGGTTCCGACGAGAACTCAGCAGCTGATTCCAAGAAAGCCATGTCCGCTGCTAAGCTTGCGGAGCTTGCTCTCATTGATCCAAAGCGTGCAAAGAGGATTTGGGCAAATAGGCAATCTGCTGCAAGGTCAAAGGAAAGGAAGATGAGATACATAGCTGAGCTTGAACGTAAAGTACAGACCCTGCAAACAGAAGCAACATCATTGTCTGCTCAGTTGACCCTGTTGCAGAGAGATACAAATGGTCTGACGGCTGAAAACAGTGAACTGAAACTGCGTTTGCAAACAATGGAGCAACAGGTTAACTTGCAAGATGCATTAAATGATGCATTGAAAGAGGAGATCCAGCATCTGAAAGTTTTGACTGGGCAAACTATGCCAAATGGTGCACCTATGATGAACTTCCCTCAGTCTTATGGAACTGGCGCACAATTTTATCCCAACAATCAGGCCATGCACACTCTTTTAACTGCACAGCAGTTTCAGCAGCTCCAGATTCATTCTCATAAGCAGCATCAGCTTCAGCAGCATCAACTGCACCAGCTGCAGCAGCAGCAGCAGCAGATTCAACAGCAGATTCAGCAGCAACAAATGCAGCAGGAACAGCCTCAACAAGCTGGAGATCTGAAAATCCGAGGATCTATGGCTTCTCCGAGCCAGAAGGAAAATGCATCAGACACCAACTCTTCTGCTGTGAAAGAATGA 1065 47.98 MPDNPPKNLGHRRAHSEILTLPDDLSFDSDLGVVGGADGPSFSDETEEDLFSMYLDMDKLNSSSATSSFQMGEPSSAAPLGSASAAMTENVVARPNDRRVRHQHSQSMDGSTSIKPEMLMSGSDENSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVNLQDALNDALKEEIQHLKVLTGQTMPNGAPMMNFPQSYGTGAQFYPNNQAMHTLLTAQQFQQLQIHSHKQHQLQQHQLHQLQQQQQQIQQQIQQQQMQQEQPQQAGDLKIRGSMASPSQKENASDTNSSAVKE* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23226431 23231766 - Vvi5g1269 Vvi5g1269 787411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1269 354 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 347 - -
Vvi5g1269 354 Coils Coil 165 234 - -
Vvi5g1269 354 MobiDBLite consensus disorder prediction 336 354 - -
Vvi5g1269 354 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 147 210 IPR004827 GO:0003700|GO:0006355
Vvi5g1269 354 SUPERFAMILY Leucine zipper domain 149 200 IPR046347 GO:0003700|GO:0006355
Vvi5g1269 354 MobiDBLite consensus disorder prediction 64 83 - -
Vvi5g1269 354 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 347 - -
Vvi5g1269 354 Gene3D - 148 201 - -
Vvi5g1269 354 SMART brlzneu 145 209 IPR004827 GO:0003700|GO:0006355
Vvi5g1269 354 MobiDBLite consensus disorder prediction 314 354 - -
Vvi5g1269 354 Pfam bZIP transcription factor 149 203 IPR004827 GO:0003700|GO:0006355
Vvi5g1269 354 CDD bZIP_plant_RF2 150 199 IPR044759 GO:0003700|GO:0006355
Vvi5g1269 354 Coils Coil 292 322 - -
Vvi5g1269 354 MobiDBLite consensus disorder prediction 64 131 - -
Vvi5g1269 354 MobiDBLite consensus disorder prediction 106 130 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14826 PF00170 bZIP_1 9.00E-09 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1269 - - vvi:100266402 584.334