Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g1269 | ATGCCCGATAACCCGCCAAAGAATCTGGGTCACCGGCGTGCCCATTCCGAGATTCTTACTCTTCCCGATGACCTTAGTTTTGATAGTGATCTTGGCGTGGTGGGTGGCGCTGACGGGCCTTCGTTCTCAGATGAGACCGAAGAGGACTTATTTTCTATGTACCTTGATATGGATAAGTTGAATTCCTCTTCTGCAACATCGTCATTTCAAATGGGTGAGCCATCTTCTGCGGCCCCACTGGGATCCGCTTCGGCAGCAATGACTGAGAATGTAGTTGCTCGGCCTAATGATAGGCGAGTTAGGCATCAGCATAGCCAGTCCATGGATGGGTCGACCAGCATTAAGCCTGAGATGCTCATGTCGGGTTCCGACGAGAACTCAGCAGCTGATTCCAAGAAAGCCATGTCCGCTGCTAAGCTTGCGGAGCTTGCTCTCATTGATCCAAAGCGTGCAAAGAGGATTTGGGCAAATAGGCAATCTGCTGCAAGGTCAAAGGAAAGGAAGATGAGATACATAGCTGAGCTTGAACGTAAAGTACAGACCCTGCAAACAGAAGCAACATCATTGTCTGCTCAGTTGACCCTGTTGCAGAGAGATACAAATGGTCTGACGGCTGAAAACAGTGAACTGAAACTGCGTTTGCAAACAATGGAGCAACAGGTTAACTTGCAAGATGCATTAAATGATGCATTGAAAGAGGAGATCCAGCATCTGAAAGTTTTGACTGGGCAAACTATGCCAAATGGTGCACCTATGATGAACTTCCCTCAGTCTTATGGAACTGGCGCACAATTTTATCCCAACAATCAGGCCATGCACACTCTTTTAACTGCACAGCAGTTTCAGCAGCTCCAGATTCATTCTCATAAGCAGCATCAGCTTCAGCAGCATCAACTGCACCAGCTGCAGCAGCAGCAGCAGCAGATTCAACAGCAGATTCAGCAGCAACAAATGCAGCAGGAACAGCCTCAACAAGCTGGAGATCTGAAAATCCGAGGATCTATGGCTTCTCCGAGCCAGAAGGAAAATGCATCAGACACCAACTCTTCTGCTGTGAAAGAATGA | 1065 | 47.98 | MPDNPPKNLGHRRAHSEILTLPDDLSFDSDLGVVGGADGPSFSDETEEDLFSMYLDMDKLNSSSATSSFQMGEPSSAAPLGSASAAMTENVVARPNDRRVRHQHSQSMDGSTSIKPEMLMSGSDENSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVNLQDALNDALKEEIQHLKVLTGQTMPNGAPMMNFPQSYGTGAQFYPNNQAMHTLLTAQQFQQLQIHSHKQHQLQQHQLHQLQQQQQQIQQQIQQQQMQQEQPQQAGDLKIRGSMASPSQKENASDTNSSAVKE* | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 23226431 | 23231766 | - | Vvi5g1269 | Vvi5g1269 | 787411 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g1269 | 354 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 1 | 347 | - | - | |
Vvi5g1269 | 354 | Coils | Coil | 165 | 234 | - | - | |
Vvi5g1269 | 354 | MobiDBLite | consensus disorder prediction | 336 | 354 | - | - | |
Vvi5g1269 | 354 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 147 | 210 | IPR004827 | GO:0003700|GO:0006355 | |
Vvi5g1269 | 354 | SUPERFAMILY | Leucine zipper domain | 149 | 200 | IPR046347 | GO:0003700|GO:0006355 | |
Vvi5g1269 | 354 | MobiDBLite | consensus disorder prediction | 64 | 83 | - | - | |
Vvi5g1269 | 354 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 1 | 347 | - | - | |
Vvi5g1269 | 354 | Gene3D | - | 148 | 201 | - | - | |
Vvi5g1269 | 354 | SMART | brlzneu | 145 | 209 | IPR004827 | GO:0003700|GO:0006355 | |
Vvi5g1269 | 354 | MobiDBLite | consensus disorder prediction | 314 | 354 | - | - | |
Vvi5g1269 | 354 | Pfam | bZIP transcription factor | 149 | 203 | IPR004827 | GO:0003700|GO:0006355 | |
Vvi5g1269 | 354 | CDD | bZIP_plant_RF2 | 150 | 199 | IPR044759 | GO:0003700|GO:0006355 | |
Vvi5g1269 | 354 | Coils | Coil | 292 | 322 | - | - | |
Vvi5g1269 | 354 | MobiDBLite | consensus disorder prediction | 64 | 131 | - | - | |
Vvi5g1269 | 354 | MobiDBLite | consensus disorder prediction | 106 | 130 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14826 | PF00170 | bZIP_1 | 9.00E-09 | CL0018 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g1269 | - | - | vvi:100266402 | 584.334 |