Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1273 ATGGCGCCATTGATCAGGAGGGATGCGGAGAATTCCGAAGTGCATCCATTCAGTCTGTGGGTGGGTAATGTGGGGAACAGCGTTACGGAGTCGGATCTGCTGGCGGTATTCTCGAGGTTCGGTGCGTTGGATTGTTTTATCTCGTATTCGTCGCGGAGCTTTGCATTCGTGTACTTCAGGCGGGGCGAGGATGCTAGAGCGGCGAGAGAGGCTCTTCAGGGTATGGTCGTTCTTGGGACTCCGATGAAAATCGAGTTTGCGAGACCGGCCAAACCATGCAAAAGCCTTTGGGTGGGTGGTTTTAGCCCATCGACCACCAAAGGAGAGTTGGAAAATGAATTTCTGAAGTTTGGTAAGATTGAGGACTTTAAGTTTTTCTGGGACCGTAACTCTGCACTTGTTGAGTATGTCAAGTTGGAAGATGCGTCACAAGCCTTGAAAGGACTTAACGGAAAACAAATAGGTGGTGCCATGATACGTGTTGATTTCCTTCGATTACAGACTTCAAGAAGAGAACAGGGGCCTGAATTCCTTGATACCAGGGATGGGCAGTTTTCTAGTAGGACCACAGGACATCTCAATTCAGCATGGATGCCACAGGATTCTATTATAAATTACTCTGAACCTTATTCTGGCTCTAAAAGACAGCATTCATCTCAATCTTCTGTGATCCGCAAAGGTGAAGGACAACCCAGTAATGTGCTGTGGGTGGGCTATCCTCCTTCCATTCAGCTTGAGGAACAAATGCTTTATAATGCAATGATCCTTTTTGGAGAAATTGAAAGAATAAAAAGTTTTCCATCAAGGCATTATTCGTTTGTGGAATTTAGAAGCATAGATGAAGCAAGGCGGGCTAAAGAGGGCCTGCAGGGCCGCCTTTTCAATGATCCAAGGATATCTATAATGTATTCTAGTAGTGGGGTTGTACCTGGAAAAGAGTATAATCCAGGAATTCCAGAATCAAGACCAGATACATTTGTTAATGAACTTCCTTTTCGACATGTAGATGTATTTAGTCCTAATGGTCCAATGGTTTCAAATAACTTTCCTGGACCATCGCCGCCTAGTGGTATTCTTGCATCAAATAGGGACTCTAAGCGATCAAGGGTGGATGGTGCTCATGATGGAAATTACATATGGCGTGGCATTATAGCTAAGGGTGGAGCTACTGTGTGTCATGCACGATGTGTTGCTATTGAGAAAGGATTGTCGTCAAAACTTCCTGAGATTGTCAATTGCTCAGCTAGAACTGGCCTGGATTTGCTTACTAAGCACTATGCTGAGGCAGTTGGATTTGAAGTGGTTTTCTTCCTGCCTGACAGTGAAGATGACTTTGCTTCATATACGGAATTTCTTTGCTATCTGGGTTCAAAGGATCGTGCTGGTGTTGCTAAACTTGATGATGGGACCACCTTATTTTTGGTGCCTCCATCTGATTTCCTTTCAAAAGTTTTGAAAGTTTCTGGCCCTGAACGCCTGTATGGTGTGGTTCTTAAATTAGCCCAACAAACAGCAGATTCCTCCACATGTTGA 1533 44.55 MAPLIRRDAENSEVHPFSLWVGNVGNSVTESDLLAVFSRFGALDCFISYSSRSFAFVYFRRGEDARAAREALQGMVVLGTPMKIEFARPAKPCKSLWVGGFSPSTTKGELENEFLKFGKIEDFKFFWDRNSALVEYVKLEDASQALKGLNGKQIGGAMIRVDFLRLQTSRREQGPEFLDTRDGQFSSRTTGHLNSAWMPQDSIINYSEPYSGSKRQHSSQSSVIRKGEGQPSNVLWVGYPPSIQLEEQMLYNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRISIMYSSSGVVPGKEYNPGIPESRPDTFVNELPFRHVDVFSPNGPMVSNNFPGPSPPSGILASNRDSKRSRVDGAHDGNYIWRGIIAKGGATVCHARCVAIEKGLSSKLPEIVNCSARTGLDLLTKHYAEAVGFEVVFFLPDSEDDFASYTEFLCYLGSKDRAGVAKLDDGTTLFLVPPSDFLSKVLKVSGPERLYGVVLKLAQQTADSSTC* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23297174 23305154 - Vvi5g1273 Vvi5g1273 787415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1273 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 166 IPR000504 GO:0003723
Vvi5g1273 510 SUPERFAMILY RNA-binding domain, RBD 12 91 IPR035979 GO:0003676
Vvi5g1273 510 Gene3D - 219 309 IPR012677 -
Vvi5g1273 510 Gene3D - 92 194 IPR012677 -
Vvi5g1273 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 306 IPR000504 GO:0003723
Vvi5g1273 510 SUPERFAMILY RNA-binding domain, RBD 91 188 IPR035979 GO:0003676
Vvi5g1273 510 SUPERFAMILY RNA-binding domain, RBD 218 306 IPR035979 GO:0003676
Vvi5g1273 510 CDD RRM3_Spen 96 165 - -
Vvi5g1273 510 PANTHER RNA RECOGNITION MOTIF-CONTAINING 373 507 - -
Vvi5g1273 510 PANTHER RNA RECOGNITION MOTIF-CONTAINING 7 375 - -
Vvi5g1273 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Vvi5g1273 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 299 IPR000504 GO:0003723
Vvi5g1273 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 82 IPR000504 GO:0003723
Vvi5g1273 510 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 7 375 - -
Vvi5g1273 510 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 373 507 - -
Vvi5g1273 510 SMART rrm1_1 234 302 IPR000504 GO:0003723
Vvi5g1273 510 SMART rrm1_1 18 85 IPR000504 GO:0003723
Vvi5g1273 510 SMART rrm1_1 95 162 IPR000504 GO:0003723
Vvi5g1273 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 89 IPR000504 GO:0003723
Vvi5g1273 510 Pfam SPOC domain 374 491 IPR012921 -
Vvi5g1273 510 Gene3D - 5 91 IPR012677 -
Vvi5g1273 510 CDD RRM3_Spen 19 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1273 - - - vvi:100250802 717.227
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41