Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1274 ATGGCGATCGACGAAAACCTCAAGACTTGCGTCGTTTTCGGTGGTCGCGGCTTCATCGGAAGGTTTCTTGTCTTGCGTCTCTTGAAACTCGGCAAATGGATCGTCCGAGTCGCCGATTCGGCTCAGTCTCTCCAACTTGATCCCTCGGAGGACCGCTCGGTTCTCTCTGAAGCGATCTCGTCTGGCCGAGCTTCGTGTTGCGCAGTCGATGTCCGCGATAAAGCTCAAGTCCGAAAAGCTATCGAAGGTGCCTCTGTTGTATTTTATATGGATCCAACAATTACTTATACAAATGATTTTTATCTTTGCTACATGATCATTGTTCAAGGTGTAAGAAATGTCATTAATGCCTGCCAAGAGTGCAAGGTTAAACGGCTGATATACAATAGCTCTGCTGATGTAGTTTTTGATGGTTCACATGATATATATAATGGAGATGAGTCCCTGCCTTGCCCTTGGAAATTTGAGGACATGCTGACTGATATTAAGGCTCAAGCAGAAGGGTTGGTCTTGATTGCTAATAATATTGATGGCCTGGTGACTTGTGCACTTCGTCCCTGCAATGTCTTTGGACCAGGAGATAAACAGCTTGTGCCATTTCTGGTGAATAAAGCGAAGTCTGGCCACGCCAAGTTTGTCATAGGAAGTGGTGAAAATATGTCAGATTTTACCTATGTTGAGAATGTTGCCCATGCCCATGTCTGTGCAGAGGAAGCTCTAGTCTCTCGGATGGTTTCTGTGGCTGGGAAGGTATTTTTCATCACTAATCTTGAGCCGGTGAAGTTCTGGGAATTTGTGTCACTTATATTGGAAGGTTTGGGGTATCAAAGACCATTATTCAAACTTCCTGCTGGGATGGTCTTGTATGTTCTTTCACTTGTTGAGTGGATGCGTGATAAGTTGGACTTCAGAAGTAACCATCCTGTGTCTGCTCAGTATGTTGTTCAAATAGCCTCACGCACTAGAACTTTCAACTGCTCTGCAGCACAAAAACATATTGGATACTCGCCTGTTGTCTCCCTGGAAGAAGGTGTTACCTTAACCACGGAATCATTCTCTCAATTATCTCAAGACTCATCCGTCATGGCACTTAGAGACTTTGATGAACAATCAAAAGTGGATAAGCTTCTGGGTGGTGGGAAAGTTGCTGATATTCTGCTATGGAGAGATGAGAAGAAAACATTCACATGCTTCCTTGCTTTGTTTCTGATGTTTTACTGGTTTTTCCTTTGTGGAAGAACTTTCATCTCATCTGCAGCCAAGCTTCTGCTGCTGGTTACAGCGATCCTTTCTGGACAAGGTATTCTTCCAACAAACATATTTGGTTTCTCCATTCAGAGGATATCTCTGTCTTGTTTTGAAATCTCGGACACGGTAGTGAATGATTTGATTACGAACATGGCAAATTTGTGGAACAACTGGATTCATATGATTAGATTGTTGGCTGGAGGAGGGGATTGGAACACTTTTTTCAAGGTAGCTATTCCTCTCTATTTCCTCAAGTTGATCTTGTCACAATGCCTGACATTGGTAGTTGGCGTGGCATTGGTCTTGGCATTCACTTCATTCTTTGTTTACGAGCAATATGAGGAGGAAATGGATGGGTTAGCAGAGGTTCTCTTTGACAGCATAAAAAAATCGAAGAGATTGTTGATGAGAAATCTACCGGCACCTTTGGTGTCATTTCTTTGTAACCGTGACGCATTGCCTGATGACGAAGGGTTTACTATGGCAAAAAGCCAGTAA 1746 43.36 MAIDENLKTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAISSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGLVTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEALVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRDKLDFRSNHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQDSSVMALRDFDEQSKVDKLLGGGKVADILLWRDEKKTFTCFLALFLMFYWFFLCGRTFISSAAKLLLLVTAILSGQGILPTNIFGFSIQRISLSCFEISDTVVNDLITNMANLWNNWIHMIRLLAGGGDWNTFFKVAIPLYFLKLILSQCLTLVVGVALVLAFTSFFVYEQYEEEMDGLAEVLFDSIKKSKRLLMRNLPAPLVSFLCNRDALPDDEGFTMAKSQ* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23307089 23315437 - Vvi5g1274 Vvi5g1274 787416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1274 581 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 489 - -
Vvi5g1274 581 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 3 7 489 - -
Vvi5g1274 581 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 354 IPR036291 -
Vvi5g1274 581 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 11 282 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vvi5g1274 581 Gene3D - 3 356 - -
Vvi5g1274 581 ProSiteProfiles Reticulon domain profile. 382 581 IPR003388 -
Vvi5g1274 581 Pfam Reticulon 382 538 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1274 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - vvi:100245662 1142.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1274 . . . . . . . . . . . . Car06g01373 . Sed12g0690 . . Bhi01g01193 Tan10g1204 Cmetu06g2044 . Hepe05g1297 . Lcy11g1256 . . . . . . . . . . Cone11ag0658 . . . . . Blo07g00114 . . . . . Bma06g01439 . Cmo06g01612 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011479 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 31