Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1276 ATGATTTTACTTGTTGGTATAAGTAGCGCTTTCAATCATGAAATAAAGAATTTCTGCATTTGCGCCTGCTTTTACCGGCTGACCTCCAAAATGCCGGTGATTCGGCTGCAACCGCCGCTAAAGCTTCTGCTTTTAATTTTGGTGTTCTATTTTCGTTATTCAGATTCAGAGATTATTTTCGAAGAACGATTTGAAGATGGATGGCAGAGCCGCTGGGTTGTATCAGATTGGAAAAGGAGTGAAGGGAAAGCTGGTTTGTTTAAGCACACAGCTGGAAAATGGTCTGGAGATCCTGATGATAAAGGTATTCAGACATATAAAGATGCCAAGCATTTTGCAATATCTGCAAAGATACCGGAGTTCAACAACAAGAACAGAACACTTGTGGTTCAGTATTCCATAAAGTTTGAACAGGACATTGAATGCGGTGGTGGTTACATTAAGCTTCACTCAGGTTATGTCAATCAGAAGAAATATGGTGGTGATACTCCTTACAGTTTGATGTTTGGACCAGATATATGTGGCACACAGCAAAAGAAGCTCCATGTTATAGTCTCTTACCAGGGACAAAATTATCCCATAAAAAAGGAGATACAATGTGAAACAGACAAGTTAACACATTTCTATACATTTATTCTTAGGCCTGACGCAACTTATACTGTCCTTGTTGACAATCGAGAAAGAGAATTTGGAAGCTTGTACACAGACTGGGATATCCTTCCTCCACGAAAAATCAAAGGTGACAGTAGAAAGCCTGCAGACTGGGACGATAGAGAATATATTGATGATCCTAATGATGTGAAACCAGTGGGATATGATTCAATTCCTGCTGAAATTCCCGATCCAAAGGCTAAAGAGCCTGATGATTGGGATGAAGAAGAAGATGGTTTATGGAGGCGACCAAAGATTCCAAATCCAGCATACAAAGGACCTTGGAAACGGAAGAAGATCAAGAACCCCAACTATAAGGGGAAGTGGAAGACTCCTTGGATTGATAATCCAGAGTTTGAAGATGACCCTGATCTATATGTACTGAAGCCAATAAAATACATAGGAATTGAAGTTTGGCAGGTTAAGGCTGGTTCAGTTTTTGACAACATTTTGATCTGTGATGACCCAGAGTATGCAAGACAAGTTGTAGAAGACGTATGGGGGAAGAACAGAGAGGCTGAAAAAGAGGCATTCGAGGAAGCAGAGAAAGTGAGAAGAGCCAGGGAAGAAAAGGAAGCGGAAAGAACAAGAGAGGAAAGTGAGAAGAGGAAAGCAGCAAGGGATAGTCGGTATGGAGCTAGGAAGCGCCGTAGAAGGCATGATCCAGACGACGACTTGGATGATTACCACGATGAACTTTAA 1353 41.32 MILLVGISSAFNHEIKNFCICACFYRLTSKMPVIRLQPPLKLLLLILVFYFRYSDSEIIFEERFEDGWQSRWVVSDWKRSEGKAGLFKHTAGKWSGDPDDKGIQTYKDAKHFAISAKIPEFNNKNRTLVVQYSIKFEQDIECGGGYIKLHSGYVNQKKYGGDTPYSLMFGPDICGTQQKKLHVIVSYQGQNYPIKKEIQCETDKLTHFYTFILRPDATYTVLVDNREREFGSLYTDWDILPPRKIKGDSRKPADWDDREYIDDPNDVKPVGYDSIPAEIPDPKAKEPDDWDEEEDGLWRRPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYIGIEVWQVKAGSVFDNILICDDPEYARQVVEDVWGKNREAEKEAFEEAEKVRRAREEKEAERTREESEKRKAARDSRYGARKRRRRHDPDDDLDDYHDEL* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23330063 23338852 - Vvi5g1276 Vvi5g1276 787418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1276 450 Gene3D - 57 413 - -
Vvi5g1276 450 Gene3D Calreticulin/calnexin, P domain 232 350 IPR009033 GO:0005509|GO:0005515
Vvi5g1276 450 SUPERFAMILY P-domain of calnexin/calreticulin 239 352 IPR009033 GO:0005509|GO:0005515
Vvi5g1276 450 PANTHER CALRETICULIN AND CALNEXIN 37 450 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 249 IPR013320 -
Vvi5g1276 450 Coils Coil 387 425 - -
Vvi5g1276 450 Pfam Calreticulin family 61 295 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 Pfam Calreticulin family 296 369 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PIRSF Calreticulin 38 447 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 ProSitePatterns Calreticulin family signature 2. 167 175 IPR018124 GO:0005509
Vvi5g1276 450 MobiDBLite consensus disorder prediction 271 297 - -
Vvi5g1276 450 MobiDBLite consensus disorder prediction 389 450 - -
Vvi5g1276 450 MobiDBLite consensus disorder prediction 389 425 - -
Vvi5g1276 450 PRINTS Calreticulin signature 137 155 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PRINTS Calreticulin signature 163 179 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PRINTS Calreticulin signature 251 264 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PRINTS Calreticulin signature 279 301 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PRINTS Calreticulin signature 317 336 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PRINTS Calreticulin signature 350 370 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi5g1276 450 PANTHER CALRETICULIN-3 37 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1276 K08057 CALR; calreticulin - vvi:100267984 776.933
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1276 . . . . . . . . . . . . . . . . Cpe03g01186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35