Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1277 ATGGCAACTCTTGTTCCTGGTGTGCTTCTGAAGCTTCTACAGCATATGAATACAGATATAAAGATTGCTGGTGAGTACAGGTCATCTCTCTTGCAAGTTGTGAGCATTGTTCCTGCACTTGCAGGTGGTGAGCTCTTTCCAAATCAAGGGTTTTATCTCAAGGTTTCAGATTCTTCACATGCTACATATGTCTCTCTTCCTGATGAACATGATGATCTCATTCTCAGTGACAAGATTCAATTGGGTCAGTTCATACATGTGGAACGGCTTGAGGCCGCTTCCCCAGTTCCCATTCTTCATGGGGTTAGGCCTGTACCTGGCCGACACCCTTGTGTTGGAAGCCCAGAAGATATTGTTGCTACTCATTCACTTGGATTCCTCAACAATTCTTCTTTAGGATTGAAACATGTGGAAAAAGTGAAATCGCCATCCAAAGTATTGAGTAATAATCATGTTGGGGATAAGGAGAAATGCACGGCAGTGAGATCAAATGGTATTGGTAAGGATGAGCAGGGGGATAAAAAAACGCCATCTTTAAGTAGATCAAAGTCTCAATTGTCAAAACAGTCTTTGAATGTTGTTATAGATAAAAAGGAAACATTAGCAAGATTGAAGTCTTCGAATTCGCGATCGATCCCTTCGTCCCCAACAAGTTGCTATTCATTACCAACTTCTTTTGAGAAATTTGCAAATGGATTTAAGCAGCAGGCAAAGATCAAAGGAGAGAGGGCCACAGCTAAGCCTGGATTGGTGGAAAAGGCAAGTTCTGTTCGAGGGCTAAGTCCAACTAGGAAGAAGGTGCCTGTAAGCCTGCTCAGAAATGCAGTTCATGGGATTGAGTTGGGGCCTAAGGCTCTCAGAAAGAGCTGGGAAGGGAGCATAGAGGTGAAGAACAGAGAAACTTCAAAACCGAGGGCCACCAAGCATGAACTAAAGCCTGAAACTCGGAGTTCTTCTGTTCCTAGAAAAAATCTCTTGAGTGACAGGTTACCATCTAAAGAGGAGAGTAAAGTTCGGATGTCTACCCAGTCATCTAAAGATGACAGTAAGGCACAGATGTCTATAAAGAAAATGAATGGAAATGGGGCTTTGGATGATGTTGAAAAGTCAAATAAACAAAGAAGTGCTGTAGGAAAGAAATCATCGGAGGTTAATAATCATGGATTACCAGGAAACTTGGTCAAGGTTTTCCCGAATAGTAAGAGATTAACAGAAGGAAGTGTTTCATGGTCCTCACTTCCATCTTCTCTTGCAAAGCTCGGAAAGGAAGTTTTGAAGCACAGAGATGCTGCACAAATATCTGCCATAGAGGCCATGCAAGAGGCTTCTGCTGCAGAGAGCTTACTTCGATGCTTAAGCACATACTCTGAGCTAAGTTCGACTGCTAAAGAAGACAACCCACAGCCTGCTGTGGAGCAGTTCTTGACTCTGCATGCAAGCTTGAATAATGCTCGCCTTGTTGCTGATTCGCTATCTAAAACCATCCCAGTTGGTTCATCTCCAGATCATGAAGAAAACCCCTCAGAAGAAGCATTAAAGATCACTTCGGATAGACGTAAACAGGCAGCTTCCTGGGCCCATGCTGCATTGGCCACCAATTTGTCATCCTTCAGTGTATTTAGAAAAGAATCCACTTTGGGTCTGGCTCCATCTCAAAACCAGAAGACTCTAGCTGGAAATCAACCCATGTTAGTCCTTGAGAACTCTGTTAAGAATGCTTCAACAAAGACACAAACCAAGGCCCGCCAGACAGTTGGCTCTAAGCTTGCTGCACCAGGAACTCCACGCAGACCAGGGGATGGGCCAACTGCAAGCCAGAAACCAAGGCCCCCACCTCCAACAGAGTGGATCAGAGGAAATGGTCTTGACGAAGCCATTGACTTGGCTGAAATGTTGCGAATGGAGTCACAAGATTGGTTCTTAGGATTTGTGGAGAGGTTCTTGGATGCTGATGTGGACATCTCGGCATTGTCAGATAACGGTCAGATAGCAGGTATGCTTACTCAGCTCAAGAGCGTAAATGACTGGTTAGATGAGATAGGGTCTAGCAAGGATGAAGGCGACACACCCCATATTTCAGCTGAGACAATCGACAGGCTGAGGAAGAAAATTTATGAGTATCTTCTCACGCATGTGGAATCTGCTGCTGCTGCACTTGGTGGTGGTGGATCACAACCATCGCCACCAACCCGAACAACAGAATCAAAAACAAGAAGATAA 2220 44.46 MATLVPGVLLKLLQHMNTDIKIAGEYRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFIHVERLEAASPVPILHGVRPVPGRHPCVGSPEDIVATHSLGFLNNSSLGLKHVEKVKSPSKVLSNNHVGDKEKCTAVRSNGIGKDEQGDKKTPSLSRSKSQLSKQSLNVVIDKKETLARLKSSNSRSIPSSPTSCYSLPTSFEKFANGFKQQAKIKGERATAKPGLVEKASSVRGLSPTRKKVPVSLLRNAVHGIELGPKALRKSWEGSIEVKNRETSKPRATKHELKPETRSSSVPRKNLLSDRLPSKEESKVRMSTQSSKDDSKAQMSIKKMNGNGALDDVEKSNKQRSAVGKKSSEVNNHGLPGNLVKVFPNSKRLTEGSVSWSSLPSSLAKLGKEVLKHRDAAQISAIEAMQEASAAESLLRCLSTYSELSSTAKEDNPQPAVEQFLTLHASLNNARLVADSLSKTIPVGSSPDHEENPSEEALKITSDRRKQAASWAHAALATNLSSFSVFRKESTLGLAPSQNQKTLAGNQPMLVLENSVKNASTKTQTKARQTVGSKLAAPGTPRRPGDGPTASQKPRPPPPTEWIRGNGLDEAIDLAEMLRMESQDWFLGFVERFLDADVDISALSDNGQIAGMLTQLKSVNDWLDEIGSSKDEGDTPHISAETIDRLRKKIYEYLLTHVESAAAALGGGGSQPSPPTRTTESKTRR* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23339212 23345975 - Vvi5g1277 Vvi5g1277 787419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1277 739 MobiDBLite consensus disorder prediction 327 344 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 571 618 - -
Vvi5g1277 739 PANTHER DUF936 FAMILY PROTEIN 1 738 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 292 317 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 150 177 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 146 189 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 292 390 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 571 585 - -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 718 739 - -
Vvi5g1277 739 Pfam Plant protein of unknown function (DUF936) 4 719 IPR010341 -
Vvi5g1277 739 MobiDBLite consensus disorder prediction 495 516 - -
Vvi5g1277 739 PANTHER EXPRESSED PROTEIN 1 738 IPR010341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1277 - - - vvi:104879471 1384.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34