Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1279 ATGGATGAGAAAGCAGCATTTGCCTGCAATTTCTTGCATGTTGTTTTTGTGGACAAGCTGCTGGGATTTTCCCCAAAAACACCTCCGAAGCAGATTCATGAGATCAAGGACTTCCTTCTCACTGCGAGGAGAAAAGATGCACGCTCCGTGAAGATCAAGAGGAGCAAGGATGTGGTTAAGTTCAAGGTCCGTTGCTCCAAGTACCTCTACACACTTTGCGTCTTTGATGCAGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTCCAAGACCTGTGA 291 46.74 MDEKAAFACNFLHVVFVDKLLGFSPKTPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKADKLKQSLPPGLSVQDL* 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23364999 23368333 - Vvi5g1279 Vvi5g1279 787421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1279 96 Pfam Ribosomal L38e protein family 29 95 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vvi5g1279 96 PANTHER 60S RIBOSOMAL PROTEIN L38 29 96 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vvi5g1279 96 Gene3D - 29 96 IPR038464 -
Vvi5g1279 96 PANTHER - 29 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1279 K02923 RP-L38e, RPL38; large subunit ribosomal protein L38e - vvi:100268138 137.502
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1279 . . . . . . . . Cmo08g00196 . . . . . . . . . . . . . . . Cla06g00091 Cam06g0127 Cec06g0103 Cco06g0098 Clacu06g0102 Cmu06g0099 Cre06g0870 . . . . . . . . . . . . . . . . Sed09g0403 . . . . . . . Cpe17g01085 Bhi12g02498 Tan06g1556 Cmetu11g0956 . . . . . . . . . . . . . . Cme11g02452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001020 4 4 4 5 4 1 0 2 2 3 1 1 4 2 3 2 1 4 3 1 2 2 4 2 5 2 2 4 3 2 79