Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1280 ATGTCACCTCTCCAATCAATGCCTTACTCTGATGTATTTAATTTCAGTGATCAAAATGTTGCTACTAACAGTGTTAGTGATGGCAGAGGTACTTTTAATGTTGCTGGGAGTTCTTTTAGCTCTGGAGATAAGATGCCTTTTCAACCCATGGATTCTCAATTTGGTTTTTCATTGAATTCCACAGAAGCAGACAATTCAAATGCTACAAGAAGTAACAACAGTCCTTTTCAACAGAACTTTGTTTCAGAAATTGGGTCAGATGCTAGGAGAAGTATCAGACGTCCACTTGCTGAGAAGATGCTCACGGCTCTGTCTTTTTTTAAACAGTCATGTGAAGGAGGCATTCTTGCACAAGTTTGGGTTCCAATTAGAACAGGAGATCACTACATGTTAAGCACTTACGAGCAACCATACTTGCTTGACCAAACACTTGCAGGTTATCGTGAAGTCTCAAGGGCATTCACCTTCTCTGCAGAAGACAAATCAGGGCTTTTGCCAGGACTTCCTGGTCGAGTATTCATGTCTAAAGTTCCAGAGTGGACTTCAAATGTAGGCTATTACAACTTGGAGGAGTATTTGCGGGTAAAGCATGCTGCTCATCATGACGTTCGTGGATCTATTGCATTACCTGTTTTTGATCCTCCTGAGATGTCATGTTGCGCTGTTTTAGAGCTCGTGACTGTAGAAGAGAAATCTAATTTTGATTCAGAGATGGAAATGGTTTGTCAGGCCCTCGAGGCTGTGAACTTAAAGAGCACCACACCACCTCGACTTCAACAACAATACTCAAATAACCAGAGAGCTGCCTTGGCAGAGATCACTGATGTTTTACGAGCAGTATGTCATGCTCATAGATTGCCATTGGCTTTGACATGGATTCCATGTAATTTCATCAGGGGAGATGCTGATGAAATAATAAGAGTACGTATTAAACAGAGTAACACAAGTTCAAGTGGAAAATGCATGCTATGCATAGAGGAGACAGCTTGCTATGTAAATGATAGAGAGATGCAAGGTTTTGTGCATGCATGCATGAAGCATTATATTGAGGAAGGGCAAGGTGTTTCTGGAAAAGCACTCCAATCAAATCATCCCTTCTTCTTCCAGGATGTAAAGAAGTATGACATCAGTGAGTATCCACTTGTTCATCATGCACGCAAGTTTGGCCTGAATGCTGCTGTCGCAATTAGGTTGAGAAGCACCTTCACTGGTAATGATGATTATATATTGGAGTTCTTTCTCCCCCTTAGCATGAAAGGGAGTCCAGAACAGCAACTTTTGTTAAACAACCTCTCAGGCACCATGCAAAAGATGTGTAGGAGCTTGAGGAGAGTTTCAGACACAGAGTTGCTTGGAGTAGAATGTTCTAAATTTGGGATTGAAAGGGGAGCACTTACAAATTTACCCCCAATGCCTGTATCCGGAAGTAACTCTCAATTGGAATCGTCAGAATTTGAATTCAATTTGGACAGGATGGCTTTGGATGCATCTAACCTAGGAGTTGAGGGAATGGTGGCAAGTGTTCCCCGTGAAAAGAAAACAAGTGGATCAAGAAGACAGCAGGATAAAAGACGGACAGTGGCTGAGAAAAATGTGAGCCTCAGCCTCCTTCAGCAGTACTTTTCTGGGAGTCTCAAGGATGCAGCAAAAAGCATCGGAGTTTGCCCCACTACACTCAAAAGAATCTGCAGACAACATGGGATATCAAGATGGCCGTCCCGCAAGATCAACAAGGTGAACAGATCACTGAGGAAGATACAGACTGTCCTCAGTTCTGTTCAGGGAGTCGAAGGCGGATTGAAGTTCGACCCAGCCACTGGGGGGCTCGTAGCTGCAGGCTCCGTAATCCAAGACTTCGTTGTTGATGGTGAGCAGAACCTGAACCCGCCCAGGCGAGAGCAGAAGACATCCAACATCGCTCTGGTCGACTGTAGCGAAGACTCCAGATCCATGGATTTGGAAAGCGGATCGTTCCGCACATGGGGGGCCAGGAGCTCAACCACAACCTTCCCGGCTGCTGCTGCCGTTGCCGCAGCCAATGAGATGGACACCGTAGTCGACGGTGATCAACCCACGTCTTCGGGCATGACAGCCTCGTCCAACAGCTCTGCCTCAATGGTTCATGCGAGTTCCTCAAGCTCGCCAAGTTTCGAGAGGCAGCTGCCGGCGAGGGGGAAGACAAAGGTGGAAGACGGTGGGTCGAAGATCACCGTAAAGGCTACATACAAAGAAGACACCATCAGATTCAAGTTTGAGCCTTCTGCTGGTTGCTTCCAACTATACGACGAAGTAGCCAGAAGGTTCGGACTTCAGATCGGCACATTCCAGCTCAAGTACCTTGATGATGAAGAAGAGTGGGTGATGCTGGTAAATGACGCCGATCTACAAGAGTGTCTTGACATTCTGGAGGATGTTGGATCCCGGAGCGTCAAGTTTCTCGTCCGGGACACTCCAGCCGCCATGGGTAGCTCCGGAAGCAGCAACTGCTTCCTGATCGTGTTTAGTCAAATAATGAATGAAAATACAAGTTTTTTTATGCAACAATCTCTTCATTTTCTTCCTGCCCTCATCCACTTCACTTCATGA 2586 45.71 MSPLQSMPYSDVFNFSDQNVATNSVSDGRGTFNVAGSSFSSGDKMPFQPMDSQFGFSLNSTEADNSNATRSNNSPFQQNFVSEIGSDARRSIRRPLAEKMLTALSFFKQSCEGGILAQVWVPIRTGDHYMLSTYEQPYLLDQTLAGYREVSRAFTFSAEDKSGLLPGLPGRVFMSKVPEWTSNVGYYNLEEYLRVKHAAHHDVRGSIALPVFDPPEMSCCAVLELVTVEEKSNFDSEMEMVCQALEAVNLKSTTPPRLQQQYSNNQRAALAEITDVLRAVCHAHRLPLALTWIPCNFIRGDADEIIRVRIKQSNTSSSGKCMLCIEETACYVNDREMQGFVHACMKHYIEEGQGVSGKALQSNHPFFFQDVKKYDISEYPLVHHARKFGLNAAVAIRLRSTFTGNDDYILEFFLPLSMKGSPEQQLLLNNLSGTMQKMCRSLRRVSDTELLGVECSKFGIERGALTNLPPMPVSGSNSQLESSEFEFNLDRMALDASNLGVEGMVASVPREKKTSGSRRQQDKRRTVAEKNVSLSLLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVLSSVQGVEGGLKFDPATGGLVAAGSVIQDFVVDGEQNLNPPRREQKTSNIALVDCSEDSRSMDLESGSFRTWGARSSTTTFPAAAAVAAANEMDTVVDGDQPTSSGMTASSNSSASMVHASSSSSPSFERQLPARGKTKVEDGGSKITVKATYKEDTIRFKFEPSAGCFQLYDEVARRFGLQIGTFQLKYLDDEEEWVMLVNDADLQECLDILEDVGSRSVKFLVRDTPAAMGSSGSSNCFLIVFSQIMNENTSFFMQQSLHFLPALIHFTS* 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23397412 23403662 + Vvi5g1280 Vvi5g1280 787422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1280 861 PANTHER PROTEIN NLP8 634 831 IPR045012 GO:0003700
Vvi5g1280 861 PANTHER PROTEIN NLP8 6 619 IPR045012 GO:0003700
Vvi5g1280 861 MobiDBLite consensus disorder prediction 512 527 - -
Vvi5g1280 861 Gene3D - 732 815 - -
Vvi5g1280 861 SUPERFAMILY CAD & PB1 domains 729 819 - -
Vvi5g1280 861 ProSiteProfiles PB1 domain profile. 735 817 IPR000270 GO:0005515
Vvi5g1280 861 MobiDBLite consensus disorder prediction 686 730 - -
Vvi5g1280 861 SMART PB1_new 735 817 IPR000270 GO:0005515
Vvi5g1280 861 Pfam PB1 domain 736 816 IPR000270 GO:0005515
Vvi5g1280 861 MobiDBLite consensus disorder prediction 507 527 - -
Vvi5g1280 861 CDD PB1_NLP 736 816 IPR034891 -
Vvi5g1280 861 MobiDBLite consensus disorder prediction 686 720 - -
Vvi5g1280 861 Pfam RWP-RK domain 531 579 IPR003035 -
Vvi5g1280 861 ProSiteProfiles RWP-RK domain profile. 512 599 IPR003035 -
Vvi5g1280 861 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 634 831 - -
Vvi5g1280 861 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1280 - - - vvi:100262961 1545.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi18g95 ECH 1 747 NLP Transcription Factor Family AT1G20640 53.1 3.5e-226 781.9
Vvi18g95 ECH 1 740 NLP Transcription Factor Family AT1G76350 55.7 1.1e-221 766.9
Vvi2g191 . 187 867 NLP Transcription Factor Family AT1G64530 58.5 7.7e-224 773.9
Vvi2g190 . 82 294 NLP Transcription Factor Family AT1G64530 69.1 7.0e-84 308.9
Vvi2g191 . 266 866 NLP Transcription Factor Family AT4G24020 55.8 6.5e-199 691.0
Vvi2g190 . 161 290 NLP Transcription Factor Family AT4G24020 62.0 1.5e-41 168.3
Vvi5g1280 . 1 831 NLP Transcription Factor Family AT2G43500 50.2 3.8e-210 728.8
Vvi5g1280 . 90 831 NLP Transcription Factor Family AT3G59580 53.2 1.8e-209 726.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14827 PF00564 PB1 1.80E-16 CL0072 Vvi TF