Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1285 ATGAAGAACAACAGCAGCAGCAGCAGCAACCACATCGCAAGCCTCGATTCCAGATTCAACCAAACCCTCAGAAACGTTCAGGAGTTACTTAAAGGCCGCAGTTTCCCTGGTAAAGTATTACTAACACGGAGATCGGACCCATTGGATAGCTCAAGTGTTCAAGAACGCAGTCCAGATGATGAAAGGAGTTTCTCAGACAATGATACTGGACCTAGTGATCGTATAGACAAGTCTGTTGAGGAAGAAGATGAAGGCACAGGCAAGCCAAATAACACTGCAACTGCTAATAAGTTAAAATCTTCAAAACCAAATACTGAGAACACGCCCAAAGACGTTCCGAAATCCACAATGGGTGCTAGAGCTACAGATTCAGCAAGGGTTATGAAGTTCACAAAGGAGCTATCCGGGCCAACTGTCATATTAGAAACATTGCGTGAGTTATCCTGGAGTGGCATACCACCATATATGCGCCCCACTATATGGAGGCTTCTTTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGTGTTCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGATTGCTGTTGATTGTCCAAGAACGGTGCCTGATGTTTCTTTCTTTCAAGAAGAGCAAGTTCAGAAATCCCTGGAGCGCATTCTTTATACCTGGGCGATTCGACATCCTGCAAGTGGCTATGTTCAAGGAATAAATGATCTTGTGACCCCGTTTTTAGTGGTTTTCTTATCAGAATACTTAGAAGGGAGCATGGATAATTGGTCTATAATTAATCTGTCTCCGGAGAAAATCTCTAACGTAGAAGCTGATTGCTATTGGTGCCTATCAAAGTTGCTCGATGGTATGCAAGACCATTATACATTTGCTCAACCAGGAATACAAAGACTCGTGTTTAAGCTGAAGGAATTGGTCCGACGGATTGATGAACCTGTTTCAAGGCACATGGAGGAGCAAGGGCTTGAGTTTCTTCAATTTGCTTTCCGTTGGTTCAACTGTCTTCTAATACGAGAGATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGTGGTCGGATACGCTTCAGAAGCTTGATTTCCAAGAGCTGGTAATGTTCCTTCAACACCTTCCAACTCATAACTGGACTCACCAAGAGCTCGAGATGGTGCTTTCCAGGGCTTATATGTGGCACACCATGTTCAACAGCTCCCCCAGCCACTTAGCTAGCTAA 1347 44.1 MKNNSSSSSNHIASLDSRFNQTLRNVQELLKGRSFPGKVLLTRRSDPLDSSSVQERSPDDERSFSDNDTGPSDRIDKSVEEEDEGTGKPNNTATANKLKSSKPNTENTPKDVPKSTMGARATDSARVMKFTKELSGPTVILETLRELSWSGIPPYMRPTIWRLLLGYAPPNSDRREGVLKRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPDVSFFQEEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSMDNWSIINLSPEKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFNLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDTLQKLDFQELVMFLQHLPTHNWTHQELEMVLSRAYMWHTMFNSSPSHLAS* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23463410 23471324 + Vvi5g1285 Vvi5g1285 787427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1285 448 Gene3D - 313 448 - -
Vvi5g1285 448 SMART tbc_4 148 404 IPR000195 -
Vvi5g1285 448 MobiDBLite consensus disorder prediction 30 121 - -
Vvi5g1285 448 Pfam Rab-GTPase-TBC domain 156 396 IPR000195 -
Vvi5g1285 448 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 445 - -
Vvi5g1285 448 MobiDBLite consensus disorder prediction 88 112 - -
Vvi5g1285 448 ProSiteProfiles TBC/rab GAP domain profile. 151 378 IPR000195 -
Vvi5g1285 448 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 187 312 - -
Vvi5g1285 448 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 5 445 - -
Vvi5g1285 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 436 IPR035969 -
Vvi5g1285 448 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 132 338 IPR035969 -
Vvi5g1285 448 MobiDBLite consensus disorder prediction 49 87 - -
Vvi5g1285 448 Gene3D - 130 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1285 K20360 TBC1D22, GYP1; TBC1 domain family member 2 - vvi:100242329 904.434
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1285 . . . . . . . . . . . Cma14g01425 . Car14g01255 . . Cpe03g01198 . . . . . . . . . . . . . . Cone14ag0625 Cone15ag0635 Cone18ag0862 Cone11ag0647 . . . Cme07g01957 . . . . . . . . . . Cmo14g01461 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005593 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 5 1 39