Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1288 ATGAAAAATTGCAGGCAGTTGGATAAGAAGATCAAACAAGCCCATCATTGTTACAGTAGCATAATCTCATATGGGTTTTTAACGGTGGCTAGTACAAAGGCTGTTGAGTGGATGCTGAAAGTCAATGCTCACTATGGGCTTTCTGCTCTGACTGTAGTCCTTGCTGTTAATTATGTTGATAGGTTTCTGTCGAGTTCGTGTTTTCAGAGAGATAGGTCGTGGATGAGTCAACTCGCTGCTGCCACATGTCTCTCTTTGGCTGCAAAGGTGGACGAAACCGATGTTCCTCTTCTCTTAGACCTGCAGGTAGGGAAGGCTGCTAGGGCAAGCACAAGCTCCCAGAGTCTCAGCAATGGGCCACACCTTCTGAGTCAGCAGCGTTCTTTTCCAGGTGATATGGGCATAGCAGATGATTTGGGCTTTTTCAACTACCTGCATGAGGAGTTTGTGGAAGTTTCAGCTGCTGGCATTGACGAGAACGTGATTGGACAGTTTGGTATAGGATTCTACTTGGCTTACTTGGTGTTTGAGAAAGTGATTGTTACTATCAAGCACAATGATGACAAACAGTATGTACAAGAGTCTAAAGCTGGCGGAGCTTTCGCGGTTTCTGAGGATGTATGGAATGAACCACTTGGACGCGAAACTGAGATCAGATTTGCCTTTCAGAGAAAAAGCTGGGAGTACTTGGAGAAGGCCAAATTGAAGGAGTGGATGTCTGGTGGTGTGAATTCACCTGTTCGTGCCTTCAAGTCAGTTGTCATCTTTAATTGGAGGGAGGAACAGAACAAGGAGACTGACCTTATTCATATTATGGATGCCATGATGGACTTGTTCACCATTCCAATAGGAATCTTCATTTGGACTTCAACTCAGGTTTCAGCATGTCAACGTGGAAGCAATAGTGACTCGACAGGTGAGAAACAAAGTGAGAAGAATCTACAGCAGAATGGTTTTGTGGAAGTTAATGGAAATATCCCATTAGCCAAGGGGTTTAGACTTCTCTACCGTTTGGTTGGCCCAGAAAAAGAATTGATGCCTAGTTCACAAGGTTCCTCATTCGCTTGGTCGCCTTTGGGTACTTTTGATCAGTTCTCACCCGTCTCCAGTTTCAATACTCTCATTACCTTGCGGTATTTTCCAGCTCCATTGGAGTTTCAGAAGAGGCATGCATCTGGCAACCGAGGTGTCCCCAAGTTCAGAATTCTACTATTGCATGAGTTGCATGGTCACTTTTTGACGTGCAATTGTGGTGACCGCGTACCCTTTATTTTCATTTCATCATCCTTATTTTAA 1296 44.37 MKNCRQLDKKIKQAHHCYSSIISYGFLTVASTKAVEWMLKVNAHYGLSALTVVLAVNYVDRFLSSSCFQRDRSWMSQLAAATCLSLAAKVDETDVPLLLDLQVGKAARASTSSQSLSNGPHLLSQQRSFPGDMGIADDLGFFNYLHEEFVEVSAAGIDENVIGQFGIGFYLAYLVFEKVIVTIKHNDDKQYVQESKAGGAFAVSEDVWNEPLGRETEIRFAFQRKSWEYLEKAKLKEWMSGGVNSPVRAFKSVVIFNWREEQNKETDLIHIMDAMMDLFTIPIGIFIWTSTQVSACQRGSNSDSTGEKQSEKNLQQNGFVEVNGNIPLAKGFRLLYRLVGPEKELMPSSQGSSFAWSPLGTFDQFSPVSSFNTLITLRYFPAPLEFQKRHASGNRGVPKFRILLLHELHGHFLTCNCGDRVPFIFISSSLF* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23484127 23488627 + Vvi5g1288 Vvi5g1288 787430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1288 431 CDD CYCLIN 34 103 IPR013763 -
Vvi5g1288 431 Gene3D - 30 120 - -
Vvi5g1288 431 SMART cyclin_7 36 158 IPR013763 -
Vvi5g1288 431 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 147 239 IPR036890 -
Vvi5g1288 431 Pfam Cyclin, N-terminal domain 33 105 IPR006671 -
Vvi5g1288 431 PRINTS 90kDa heat shock protein signature 162 184 IPR020575 -
Vvi5g1288 431 PRINTS 90kDa heat shock protein signature 214 231 IPR020575 -
Vvi5g1288 431 PANTHER CYCLINS 13 250 IPR039361 -
Vvi5g1288 431 SUPERFAMILY Cyclin-like 26 103 IPR036915 -
Vvi5g1288 431 Gene3D - 139 269 IPR036890 -
Vvi5g1288 431 PANTHER CYCLIN-D3-2 13 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1288 K14505 CYCD3; cyclin D3, plant - vvi:100267897 167.548
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .