Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1291 ATGGTTGAAACATTTTTTGATGATATTTTTGTGGTTGACGGACAAGATCCAGGTGGTAAAAAATTTGATAAAGTTTCTCGTATTGAAGCATCGAGTGAGCAGTATGACATGTTCATGCAACTAGATGTGAACATAGAGGCATATCCTATTCAGGCTGGGGAGAAATTCAGAATGGTGTTAGCTCCGACTCTGCATTTGGATGGAGCAGATGTCACTGACTATTTTACTCAGGGTGAGCAGAAGTCACTTGCAGACAAATTTGATTATGTCATGTATGGGATAATATATAAAGTCTCAAATGAAGGTTCAGGACCTGATGTTAAAGGGGTGATATATGCCTCATTTGGTGGCCTTCTGATGATTCTCAAAGGTGACCCCTCCAATTTGAATAAATTAGAAGTCAATAAAAGGTTATTTCTTCTCATGAAGAAGGTATGA 438 38.13 MVETFFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVLAPTLHLDGADVTDYFTQGEQKSLADKFDYVMYGIIYKVSNEGSGPDVKGVIYASFGGLLMILKGDPSNLNKLEVNKRLFLLMKKV* 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23498291 23501139 + Vvi5g1291 Vvi5g1291 787433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1291 145 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 1 145 IPR005570 GO:0006351
Vvi5g1291 145 Gene3D - 6 145 IPR012340 -
Vvi5g1291 145 PIRSF RPB8 1 145 IPR005570 GO:0006351
Vvi5g1291 145 SMART rpol8neu 2 144 IPR005570 GO:0006351
Vvi5g1291 145 Pfam RNA polymerase Rpb8 7 144 IPR005570 GO:0006351
Vvi5g1291 145 SUPERFAMILY Nucleic acid-binding proteins 4 144 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1291 K03016 RPABC3, RPB8, POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 - vvi:100249225 291.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1291 . . . . Bpe04g00897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001797 3 3 3 3 2 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 1 2 3 4 2 67