Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g130 ATGGACTGTAATGGGTGCGTACAGAAGATCAAGAAAGCCCTATACGGCATCAATGGTATATATGATCTCTATATTGACTTCCCCCAACAAAAATTGACAATAATTGGGTGGGCGGATCCTGAAAAAATAATGAAAGCCATTAAGAAGACGAGAAAGATTGCCACCATCTGTAGTCATACAGAACCGACAGACCCAGCCACAAAGCCACCGGAACAAGCACCTGAAGGCGGCGGCCCACCCCCAGCAGAAGCTGCAAACCCTCCCCCTGCAGAAGCTCCACAAGCCGAGGCTGCCCCACCAGCGGAGCCACCAAAAGACCCACCACCACCTGAAAATCCTCCGCCAGAGGCAACACCAGCACCTGCAGCTGCAGATGTTAATGCAGGTAACCCAGCACGACCTAAAGATGTGGAAGAGGTTCACGTAATATACCACCACCCACCTGAGTATGGCTACAGATATGGGTATGGTCACCGGTATGGAGGGCACTGGAACAACTACTCCAATGTCCAAGGATTGCAACAAGAGCCACCCCCAACCGTCTACACCAATGTCCAAGGAGTCCATCACGAGCCACCCCCGACAATGTACACCAATGTCCAAGGACTCCATCATGAGCCACCCCCACCTGTCTATGTGACTCATAGGTACAACACATACAAGCCACCACCTTACATCACTGAATACGAGTACATCCGGTCGCCACCACGGCACGCACATTACAGTAGGATGGACCGCTATAGTGAGGATTATCGCAACGTGAATAACAGCAATGGAAACATCACTTCAATGTTTAGCGATGAAAATCCAAATGCGTGTAGAATAGTCTAG 831 50.18 MDCNGCVQKIKKALYGINGIYDLYIDFPQQKLTIIGWADPEKIMKAIKKTRKIATICSHTEPTDPATKPPEQAPEGGGPPPAEAANPPPAEAPQAEAAPPAEPPKDPPPPENPPPEATPAPAAADVNAGNPARPKDVEEVHVIYHHPPEYGYRYGYGHRYGGHWNNYSNVQGLQQEPPPTVYTNVQGVHHEPPPTMYTNVQGLHHEPPPPVYVTHRYNTYKPPPYITEYEYIRSPPRHAHYSRMDRYSEDYRNVNNSNGNITSMFSDENPNACRIV* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1312474 1313977 + Vvi5g130 Vvi5g130 786272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g130 276 Pfam Heavy-metal-associated domain 1 50 IPR006121 GO:0046872
Vvi5g130 276 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 275 IPR045181 GO:0046872
Vvi5g130 276 SUPERFAMILY HMA, heavy metal-associated domain 1 52 IPR036163 GO:0046872
Vvi5g130 276 MobiDBLite consensus disorder prediction 67 120 - -
Vvi5g130 276 Gene3D - 1 56 - -
Vvi5g130 276 ProSiteProfiles Heavy-metal-associated domain profile. 1 56 IPR006121 GO:0046872
Vvi5g130 276 MobiDBLite consensus disorder prediction 59 133 - -
Vvi5g130 276 PANTHER OJ1116_C07.8 PROTEIN 1 275 - -
Vvi5g130 276 CDD HMA 1 55 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g130 - - - vvi:100263762 308.145
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40