Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1307 ATGTTCCCTGGAACGCACTCTCTCCTTCCAATCTCTTTGCCGGAATTTCGCCATGGATTCCGGCCGCCAAGAAGCATTCAAAGTCCTCCTCAATGTGGTGGTCACATATTGAACATTGGATTTGAAATGGGTCATGAGAACATCATTTTTTTTAACCAAAAGTCTCTGGGTTTTACAAAAATGAGTGAAGGACAAGGTGAGGCTAAAAGCCAAGTTTGTGAGGCGGCGAGGAAGGGTGACACTGCCAAACTGAGAGCTTTGATAGACTCCGGAGCAGATGTTTCGTTCTTCGATGGTGAAGGCCTTAACCCACTCATGCATGCTGCCAGGCTCGGCCACGCTGATGTTGTCAAGATTCTGCTCGAAACCGGTGTTCCTTGGAACGCACTCTTTCCTTCCAATCTCTCTGCCAGCAATTTCGCCATGGATTCCGGCCACCAAGAAGCATTCGAAGTTCTATATAATATGGTCTTAAACAATACAATTAGGTCCTCAAACATAGTTTTAGAATTGTTTAAGCATTTCAACCTAATGTCTTCTATAGGGCATAATTGTAGTTCTAAGATAGCTAAATCAAGTTGCAACCGTTGTGATTTTTTCTAG 603 43.78 MFPGTHSLLPISLPEFRHGFRPPRSIQSPPQCGGHILNIGFEMGHENIIFFNQKSLGFTKMSEGQGEAKSQVCEAARKGDTAKLRALIDSGADVSFFDGEGLNPLMHAARLGHADVVKILLETGVPWNALFPSNLSASNFAMDSGHQEAFEVLYNMVLNNTIRSSNIVLELFKHFNLMSSIGHNCSSKIAKSSCNRCDFF* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23637747 23649385 + Vvi5g1307 Vvi5g1307 787449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1307 200 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Vvi5g1307 200 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 69 170 - -
Vvi5g1307 200 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Vvi5g1307 200 SUPERFAMILY Ankyrin repeat 73 165 IPR036770 -
Vvi5g1307 200 Gene3D - 57 174 IPR036770 -
Vvi5g1307 200 SMART ANK_2a 67 96 IPR002110 GO:0005515
Vvi5g1307 200 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vvi5g1307 200 Pfam Ankyrin repeats (3 copies) 74 154 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1307 K18477 RMT2; type IV protein arginine methyltransferase [EC:2.1.1.322] - vvi:100259168 153.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1