Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1313 ATGTTTGAGCACAGTACAACGAAGCGCTCTGTTTGGGTTACTCTGAAACGCTCATCCCTAAAGTCAAAGGTGCAAAGGAATAAAATTACGACTGCTGGTGAAGGAATTGACTATAGATGCCTCATCCGTGCAACTGATGGCAAAAAGACCATTTCTGCTTCGGTGGGGCCTAAGGATCACCAACGGTTTCAAGCTTCTTATGCAACCATTCTGAAGGCCCACATGACTGCCCTAAAGAAGAGGGGGAGGAAGGACAAGAAGAAGGCTGCAGAGGGAGTTAAGAAACCAGATGATCCAAAGAAGATAAAGACCTCTGTATAA 321 45.48 MFEHSTTKRSVWVTLKRSSLKSKVQRNKITTAGEGIDYRCLIRATDGKKTISASVGPKDHQRFQASYATILKAHMTALKKRGRKDKKKAAEGVKKPDDPKKIKTSV* 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23707920 23710490 - Vvi5g1313 Vvi5g1313 787455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1313 106 PANTHER SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN 1 95 IPR003210 GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi5g1313 106 PANTHER - 1 95 - -
Vvi5g1313 106 MobiDBLite consensus disorder prediction 78 106 - -
Vvi5g1313 106 Pfam Signal recognition particle 14kD protein 1 78 IPR003210 GO:0005786|GO:0006614|GO:0008312|GO:0030942
Vvi5g1313 106 Gene3D Signal recognition particle alu RNA binding heterodimer, srp9/1 1 106 IPR009018 GO:0006614|GO:0008312|GO:0048500
Vvi5g1313 106 MobiDBLite consensus disorder prediction 89 106 - -
Vvi5g1313 106 SUPERFAMILY Signal recognition particle alu RNA binding heterodimer, SRP9/14 1 81 IPR009018 GO:0006614|GO:0008312|GO:0048500
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1313 K03104 SRP14; signal recognition particle subunit SRP14 - vvi:100259285 200.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1313 Blo01g00183 . . . . . . Bma05g01158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003222 0 3 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 12 1 49