Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1315 ATGCAAGCTCAGAGAAGAGAAACCGAGAAAGCACTCTATTCTCTTGGGGTCAAGATATCGGATCTATATGAATTGGTGAAAGGGAAACGCATTGAACTTGGCTTGTTGCAAAGAACAAATATTTTGGTCACAATTCTTGAAGCTCAAATGCCATTTTTGGATGAATGGTCGATTTTGGAAGGGGATTACTCTGTTTCTTTATCAGAAGCAATTCAAGCCTTGGTGAATGCCTCACTTCAACTTCCAATCAATGGAAACATACGGGCTGATATAAGAGAAGTCAACGAGGCACTGTACTCAGCAACGAAGATGATGGAAATAATAATTTCCAATGTACAAATGTTTATGCCAAAGGCTGAAGAAATGGACAATTTGGTTTCAGAACTAGCAAGGGTGACTGGTGGAGAAAGAACTCTATCTGAAGAATGTGGATATCTGCTGTCTAGAACTCATGCATTGCAGGTCGAAGAATGCAGCCTAAGAAGCCAGTTGATTCAACAACAACGCAGCAGCAGCAGCAGCTGCAGGGAAAAAATTTCATTGGCTGGCCTGCAACTCTTACTGACAAAAGAAAAACTTCAAAAATTTAAAGGAAAAAGAAAGAAAATCTTTACGGAGGAGGGAATGGCGTGCATGACGATGGCAATTTCTTCACAGTCTCTCAATTTCAACCGGTTTTTTGTTAGGTGTTGCCATGATCATGTTATCAGCTGTCAGAATACCACAAGCATCAGTTTCCCTCATAGGCAACAGGATCTATGTGGGAGGCTATTGTATCCCTGTAACCTCCACCAGGGAAGTCTCAGATTTTTGTCTAAGCCGATATCTGCGGTTGGTTCAGGTTCAAAGGCATCAATTATTGATCCAAAGGACAATGACATAACGATAAAAAATGCCAAGATAGTTGTAGAATCTCAAGAAGATGATGAGATACAACTAAGAGTGGACGTGGCAGGGGTGGACACTCAGAGGGTGTTTGATCATGTTTTGACAAATTTAGCTCGTTCTGCACCACCAATTCCAGGTTTTCGCAGACAAAAAGGAGGTAATTCACTCTATGTCCCAAAGAGTTTTCTTCTACAAATCCTGGGGGAAGAGCGAGTCACCAAGTTTGTCATACAAGAAATAATTACGGCCACTGTCTCTGATTATGTAATGAAGGAAAATCTGAATGTGAAGGATAAGAAGATTACAACAACACCAGCAGCTGAAGAACTCAAGTCGTTGTTTACTCCAGGAAATGAATTCAGATTCAATGCGACATTGGAGCTTGAGAAATCAGAAAGTGAAGCAACAAGTTCAAGCTCCTCTGAGATGGAATGA 1323 40.97 MQAQRRETEKALYSLGVKISDLYELVKGKRIELGLLQRTNILVTILEAQMPFLDEWSILEGDYSVSLSEAIQALVNASLQLPINGNIRADIREVNEALYSATKMMEIIISNVQMFMPKAEEMDNLVSELARVTGGERTLSEECGYLLSRTHALQVEECSLRSQLIQQQRSSSSSCREKISLAGLQLLLTKEKLQKFKGKRKKIFTEEGMACMTMAISSQSLNFNRFFVRCCHDHVISCQNTTSISFPHRQQDLCGRLLYPCNLHQGSLRFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRVFDHVLTNLARSAPPIPGFRRQKGGNSLYVPKSFLLQILGEERVTKFVIQEIITATVSDYVMKENLNVKDKKITTTPAAEELKSLFTPGNEFRFNATLELEKSESEATSSSSSEME* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23726304 23741196 + Vvi5g1315 Vvi5g1315 787457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1315 440 Gene3D - 301 425 IPR036611 GO:0006457|GO:0015031
Vvi5g1315 440 PANTHER PROTEIN ENDOSPERM DEFECTIVE 1-RELATED 1 169 - -
Vvi5g1315 440 Pfam Bacterial trigger factor protein (TF) 300 424 IPR008881 GO:0006457|GO:0015031
Vvi5g1315 440 Pfam QWRF family 1 139 IPR007573 -
Vvi5g1315 440 PANTHER AUGMIN FAMILY MEMBER 1 169 - -
Vvi5g1315 440 SUPERFAMILY Trigger factor ribosome-binding domain 300 424 IPR036611 GO:0006457|GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1315 - - - vvi:100247585 419.468
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1315 . . Bda03g00967 . . . . . Cmo08g00193 . . . . . . . . . . . . . . . Cla06g00100 Cam06g0115 Cec06g0112 Cco06g0111 Clacu06g0113 Cmu06g0111 Cre06g0881 Cone14ag0623 Cone15ag0631 . . . . . . . . . . . . . . Sed07g0072 . . . . Car08g00172 . . . Bhi12g02475 Tan06g1535 Cmetu11g0607 . . . . . . . . . . . . . . Cme11g02438
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011773 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 30