Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1316 ATGGCATGCTATAGGTCTTCACACCATCACATTCGCTTCTTATGGGGAAATCTTAATTGCTGGAGAAGTAGCTTTTCGAGGACTCAGAAAATTGGAAACAACTCATGCTGTCTCCAGAGGCGAAATCTCATTCATTCTCCATCCATTCTGTCTAGAAAGGGTTGTTGTACACTATCCAATAGTTTGGATTCAAGCATACATGAAGTTGCTCATACAATATCTTATGGCAATACGACAATTTCTTCCAAAAGTGAAAGAAAACTATGCCAAGGTGCATTTGTTGATTCTGTCGATCATAAAGAGAGAAAAATGGATATTAGTTCTTCAAACGGTAGAGTAATGCTAATTGATGGCACATCAATCATCTATAGAGCATATTACAAGCTTCTCGCAAAGTTGCACCATGGTTATCTATCACATGCTGATGGCAATGGAGACTGGGTTTTAACCATTTTTGCGGCTCTATCTCTTATTGTTGATGTTCTGGATTTTATCCCTTCACATGTAGCGGTGGTATTTGATCATAATGGAATTCCGTTTGGTCACACTTCTATTTCATCCAAAGAAAGTATTATGGCGAAAGGTCTGAATTTTCGTCACACTCTGTACCCCTCATACAAGAGCAACCGTCCACCTACACCTGATACAATTGTCCAGGGACTTCAATACTTGAAAGCTTCCATCAAGGCTATGTCTATAAAAGTGATTGAGGTACCGGGTGTTGAAGCAGATGATGTAATTGGAACTTTGTCTGTAAGGAGTGTTGATGCTGGATACAAGGTAAGAGTTGTCTCCCCAGATAAAGATTTTTTTCAGATTCTATCTCCTTCACTACGTCTTCTACGAATTGCTCCTCGTGGATTTGAGATGACCTCATTTGGAATGGAGGATTTTGCTAAGAGATATGGAAATCTGGAGCCTTCTCAGTTTGTAGATGTAATCTCACTTGTTGGTGACAAAAGCGATAATATTCCAGGTGTTGAAGGAATTGGAAATGTTCATGCTGTGCAATTGATCACTAAATTTGGTACATTGGAGAATTTGTTGCAATGTGTTGATCAAGTTCAAGAGGAACGTATCAGAAAGGCCTTGATATCAGGTGCTGATCAGGCTGTTCTAAGCAAGAACCTGGCATTGCTTCGGTGTGATCTTCCATTCTACATGGTTCCATTCACCACTGAAGATCTCATATTTACAAAACCAGAGGACAATGGGGAAAAATTCACGAGCCTCTTGAATGCCATCAGCGCTTATGCAGAGGGGTTTTCTGCAGATCCGATTATCCGAAGAGCTTTTTATTTGTGGAAGAAGCTTGAAAAACAGTGA 1326 39.97 MACYRSSHHHIRFLWGNLNCWRSSFSRTQKIGNNSCCLQRRNLIHSPSILSRKGCCTLSNSLDSSIHEVAHTISYGNTTISSKSERKLCQGAFVDSVDHKERKMDISSSNGRVMLIDGTSIIYRAYYKLLAKLHHGYLSHADGNGDWVLTIFAALSLIVDVLDFIPSHVAVVFDHNGIPFGHTSISSKESIMAKGLNFRHTLYPSYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLSVRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMTSFGMEDFAKRYGNLEPSQFVDVISLVGDKSDNIPGVEGIGNVHAVQLITKFGTLENLLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTKPEDNGEKFTSLLNAISAYAEGFSADPIIRRAFYLWKKLEKQ* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23741224 23764340 - Vvi5g1316 Vvi5g1316 787458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1316 441 Gene3D - 102 303 - -
Vvi5g1316 441 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 112 303 IPR020046 GO:0003677
Vvi5g1316 441 Gene3D - 307 395 - -
Vvi5g1316 441 SUPERFAMILY PIN domain-like 103 303 IPR029060 -
Vvi5g1316 441 CDD H3TH_53EXO 307 380 IPR020045 GO:0003677|GO:0003824
Vvi5g1316 441 CDD PIN_53EXO 115 298 - -
Vvi5g1316 441 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 305 392 IPR036279 -
Vvi5g1316 441 Pfam 5'-3' exonuclease, C-terminal SAM fold 306 402 IPR020045 GO:0003677|GO:0003824
Vvi5g1316 441 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 37 440 - -
Vvi5g1316 441 PANTHER DNA POLYMERASE I 37 440 IPR002298 GO:0003887|GO:0006261
Vvi5g1316 441 SMART HhH_4 307 342 IPR008918 GO:0003677|GO:0003824
Vvi5g1316 441 SMART 53exo3 111 399 IPR002421 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1316 - - - vvi:100242452 885.174
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .