Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1319 ATGGATTCTGTGCCATCTTTGGAGATTTTAGTTCGAGCACCAGAAGGGTTCTCTCTATGGTGTGGACCTCCATTCAACAATGGTCAACCTGCTGTCAAGCTTGAAAAGGTTATTTGTACCAATGCAAAGTTCAGCGAAGATGGGTCCAGACTCATGGTGATGAAATCAGACTCCACTGTCAGCATATACGATTGCAGCAGCTCCAAAGAGATCAGATCATTTGCAGTTCCCAATATGTCTGCAGCCACCATGTCCCCTTGCGGGACCTATCTTCAGACCTTTCAAAGACCCTCAACACCACAGGAAAAGAATGTCATCTTATGGAAGACAGAAACCGGTGCTCCTGTTTATCAACACTTCCAGAAGAACATGACCAAAACCACATGGCCCTCAGTTCAATTTAGCTCTGATGAAGCTATTGCATGCCGTCTGGCAACAAATGAGATACAATTTTTTGATGCTCGGGATTTCTCTAAAGAAATTATATATCGAGTTAGAATTCCCGGAATAGCTGCTGTAGAGCTTTCTAAGGCACCTGGGTCCCATGTGGCTGCATTTATTCCAGAATCTAAGGGAATTCCTGCCAGTGTCCAGATATTTGCTTGTGGTGAAAATTCAATGAGTCAACCTGTTGCTCGACGAAGCTTTTTCCGATGTTCAACAGTGCAATTGAGTTGGAATCGTGGCTCTACGGGGCTTCTAGTTCTGGTTCAAGCTGATGTTGATAAAACCAACCAGAGTTATTTTGGAGAATCAAAGCTGAACTACTTGACAACAAATGGAACCCATGAAGGCCTTGTGCCACTCAGTAAAGAAGGGCCAGTTCATGATGTTCAGTGGTCATATTCTGGTTCAGAATTTGCTGTTGTTTATGGATTTATGCCTGCAAAAGCAACAGTGTTTGACAAGAAGTGCAATCCTCTGGTTGAGCTTGGCACAGGCCCTTACAATACTATTCGATGGAATCCAAAGGGGAAGTTCCTATGTTTGGCAGGTTTTGGAAACTTACCTGGTGATATGGCATTTTGGGACTACAAGGAGAAAAAGCAGCTTGGAACAACTAGGGCTGAGTGGTCTGTAACAAGTGAATGGTCCCCAGATGGATGCTATTTCATGACTGCCACAACAGCTCCAAGACTACAAGTTGACAATGGGATTAAAATTTTCCACCCCAATGGATCACTGTATTTCAAGACGATGTTTGATAAGTTGTACCAGGCTGATTGGAAACCGGAATCACCAGATAGGTTTGGTGAAATTGCTGAACTTGCCCAGTCCATTGACTCATTAAAAGTTGGAGAAACCAAACAACAAGGGCAAGGTTCAAAATCTTCCGTGGCTCCTAACAAAGCCACTTCTGCCAACCCTCCTACTCAAAAACCTGCTGCATATCGTCCACCACATGCAAAGACTGCAGCTGCCATTCAGACCAAGCTATTTGGAGGGAGCTCTACAGAAGAAATGAGCAAGAACGCTGCGAAAAACAAGAAAAAAAGGGAGAAACAGAGGGAGAAGAAGGCTGCTGAGGCCGCCACTGCTGCCAATAACGGTGCATGA 1557 44.44 MDSVPSLEILVRAPEGFSLWCGPPFNNGQPAVKLEKVICTNAKFSEDGSRLMVMKSDSTVSIYDCSSSKEIRSFAVPNMSAATMSPCGTYLQTFQRPSTPQEKNVILWKTETGAPVYQHFQKNMTKTTWPSVQFSSDEAIACRLATNEIQFFDARDFSKEIIYRVRIPGIAAVELSKAPGSHVAAFIPESKGIPASVQIFACGENSMSQPVARRSFFRCSTVQLSWNRGSTGLLVLVQADVDKTNQSYFGESKLNYLTTNGTHEGLVPLSKEGPVHDVQWSYSGSEFAVVYGFMPAKATVFDKKCNPLVELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMAFWDYKEKKQLGTTRAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHPNGSLYFKTMFDKLYQADWKPESPDRFGEIAELAQSIDSLKVGETKQQGQGSKSSVAPNKATSANPPTQKPAAYRPPHAKTAAAIQTKLFGGSSTEEMSKNAAKNKKKREKQREKKAAEAATAANNGA* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23788469 23793486 - Vvi5g1319 Vvi5g1319 787461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1319 518 Coils Coil 490 514 - -
Vvi5g1319 518 Gene3D - 196 446 IPR015943 GO:0005515
Vvi5g1319 518 Gene3D - 25 188 IPR015943 GO:0005515
Vvi5g1319 518 MobiDBLite consensus disorder prediction 432 459 - -
Vvi5g1319 518 MobiDBLite consensus disorder prediction 432 518 - -
Vvi5g1319 518 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 6 513 IPR011387 GO:0003743|GO:0006413
Vvi5g1319 518 SUPERFAMILY DPP6 N-terminal domain-like 39 405 - -
Vvi5g1319 518 Pfam Eukaryotic translation initiation factor eIF2A 214 407 IPR013979 -
Vvi5g1319 518 PIRSF Transl_init_eIF2A 1 518 IPR011387 GO:0003743|GO:0006413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1319 K15026 EIF2A; translation initiation factor 2A - vvi:100249064 1002.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1319 . . . . . Bpe14g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012865 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 28