Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g132 ATGAATCAAGTTCCTTTGTTTAGCTCTGCACGGGAACTGGCAAATTTGGTGCTGAGCTCCAATCTAATCGACTGTGCTTTCACCAAAATTCTTGAACTTAAGAGAGGCCAAACAGCCTTGCCTGTTCAATACAGACTTTATCAACTGTCTTCCAAGTGCACAATTGTAGCTTTTGTCTCTTCACCTGACTGCACTCAATACCCTCTTCCTGGACAAGGAGATTTAGATCGGTCTCCTCTCTTTGACTTCCTCCGTACCGAAGAATACCCGTCCGTCTCCATTAACAGAGCAGCATTAGCCCTCTTTACCCCTCTCCATGATCATCTCTCTGGACTAACAGATGAGTTGACTCAGATTGAAGGTCAGTTAATCATCACTGGGCACTCCCTGGGAGGATCCGTTGCTTCTCTCTTCACCTTACGCCTGCTAGATGGCAATTTATTAAAACCCAAATGCCGCCCCTTTTGTATCACCTTTGGTTCACCCCTTATAGGCGACTTTGGCCTCCAACACTCCATATGGAATTCTTTCTTCCTGCATGTAGTAAACCTCAAGGAGAGGGCAATCTGCAAGGGACTGCCGCAGGTGGGTGAACGGTTTGCAGATCCATTTTCAGCTGGGATCATCATGGAACTTGAGACAATTGGATTTAATCAAACAAAGCTGCTGCAGCATAACATTGATATCAATGCTATGATAAGAACAATGGAAGCGGAAACCAGAAGACTAATCCAGAAAAATAAAGTTTCCGATGCCAAGAAACTGAATGACATAAAAAGAGACATGGCCCAGCTAGAATGGTATAAGAAGAAATCGGAAATGGGTTACTACGATTGCTTCAAAAACCAGGGGTCTAAAAGGGACCTCAACGTTGAACAGTTTAGGGGAAACCTCACAATGTACTGGGAAGACATGGTTGCACAAGTACAGAGGAAGCCCCAGGAGGAAGGAGCAACATTTCGAACCCGTTGGTTCTATGCAGGGACAGTTTATAGGAGAATGGTTGAACCACTGGACATTGCTGCCTTCTATAGAGAGGGTGGAACAGACTACATAAACAATGGAAGATCTCTTCATTACAAGCTGTTGCAGCAATGGTATGAAGAAGATGAGGCCATCTTGTCATGCGAATTGCTCAAGAGTAAAAACTGTACTCTTGAGCAGGGAAAATCATCATGGGATAATCTAGTTAAGTTCGAGGAGTATGTAATGGAACAGATTAACAACTATGCAGCGTCCCCTGAGATTTTCTTGCGGGAAAGCAGCTTCATGAAATGGTGGGGACTGTATGAGGGCTACATAGATACTTGCAGTAATTCCCATGGGTCGCAATTGATCAACTTCATGAAGAAACGTAGCTATATGAAGTATGGTTAG 1377 44.01 MNQVPLFSSARELANLVLSSNLIDCAFTKILELKRGQTALPVQYRLYQLSSKCTIVAFVSSPDCTQYPLPGQGDLDRSPLFDFLRTEEYPSVSINRAALALFTPLHDHLSGLTDELTQIEGQLIITGHSLGGSVASLFTLRLLDGNLLKPKCRPFCITFGSPLIGDFGLQHSIWNSFFLHVVNLKERAICKGLPQVGERFADPFSAGIIMELETIGFNQTKLLQHNIDINAMIRTMEAETRRLIQKNKVSDAKKLNDIKRDMAQLEWYKKKSEMGYYDCFKNQGSKRDLNVEQFRGNLTMYWEDMVAQVQRKPQEEGATFRTRWFYAGTVYRRMVEPLDIAAFYREGGTDYINNGRSLHYKLLQQWYEEDEAILSCELLKSKNCTLEQGKSSWDNLVKFEEYVMEQINNYAASPEIFLRESSFMKWWGLYEGYIDTCSNSHGSQLINFMKKRSYMKYG* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1343316 1345600 + Vvi5g132 Vvi5g132 786274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g132 458 Pfam Lipase (class 3) 108 183 IPR002921 GO:0006629
Vvi5g132 458 SUPERFAMILY alpha/beta-Hydrolases 101 183 IPR029058 -
Vvi5g132 458 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 1 183 IPR044603 GO:0006952|GO:0052689
Vvi5g132 458 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 370 458 IPR044603 GO:0006952|GO:0052689
Vvi5g132 458 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 182 371 IPR044603 GO:0006952|GO:0052689
Vvi5g132 458 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 1 183 - -
Vvi5g132 458 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 370 458 - -
Vvi5g132 458 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 182 371 - -
Vvi5g132 458 Pfam Enhanced disease susceptibility 1 protein EP domain 263 370 IPR041266 -
Vvi5g132 458 Pfam Enhanced disease susceptibility 1 protein EP domain 370 445 IPR041266 -
Vvi5g132 458 Gene3D alpha/beta hydrolase 83 186 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g132 - - - vvi:100256873 556.214
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 11