Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1321 ATGGCGGAGCATAAACGGAGCCCCATCTCCGTCGACCAAGGTGGTCTCACTTCTCTTGCGCCGAAACGACAAAAGCCCGATTTAACCATTTCCACCAAGGAAAGGAAAGAGAAGGTTGGCGAGCGCATTGCAGCTCTGCAACAGCTTGTTTCACCCTTTGGAAAGACAGATACAGCTTCGGTTCTTCTAGAGGCAATGGAGTACATAAGATTCCTTCAGGAGCAAGTTAAGGTGTTGAGCGCTCCATACCTTCAGAGTACAACAACAGCTAAGATGCAGGAGTTAGAGCGATACAGTTTAAGGAGTAGAGGTTTATGTCTTGTACCGATTTCGTACACTGTTGGGGTGGCTCGAAGCAACGGTGCAGATATCTGGGCACCCATCAAGACCGATTCCTCCCCCAAGTTCTAG 411 49.15 MAEHKRSPISVDQGGLTSLAPKRQKPDLTISTKERKEKVGERIAALQQLVSPFGKTDTASVLLEAMEYIRFLQEQVKVLSAPYLQSTTTAKMQELERYSLRSRGLCLVPISYTVGVARSNGADIWAPIKTDSSPKF* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23815689 23820063 + Vvi5g1321 Vvi5g1321 787463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1321 136 MobiDBLite consensus disorder prediction 1 35 - -
Vvi5g1321 136 PANTHER TRANSCRIPTION FACTOR BHLH154 1 123 - -
Vvi5g1321 136 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 123 - -
Vvi5g1321 136 CDD bHLH_AtbHLH_like 29 80 IPR045239 -
Vvi5g1321 136 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 72 IPR011598 GO:0046983
Vvi5g1321 136 SMART finulus 29 78 IPR011598 GO:0046983
Vvi5g1321 136 Gene3D - 20 98 IPR036638 GO:0046983
Vvi5g1321 136 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 85 IPR036638 GO:0046983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1321 - - vvi:100243890 265.774