Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1323 ATGGAGATGATCGAGGAGGCGCTCCATTTTCTTGTGCCGACGTGGTGGGAAGTGGAGATCAGCGTCGTGGCTGCGGTTTTTGTGATTATTACGTACTGGTTTTTCACGTTCGGGAATGGGGAGATAGACGAGAGTCAGGCGACCGGAGAGGGCCTGATTGGTGCCGGAGATTTGATCGATGATAATGTCAAGATGGGCCAGCTGAAGGGAGATCCTCAAACCAATTCTGCATATGTTATCAAGTTAGAATTGTTGGCAGCTAAGAATCTTATTGGTGCAAACTTGAATGGCATGTCTGATCCTTATGCTATAATCACTTGTGGTGAGGAAAAGCGATTCAGTTCAATGGTTCCTGGTTCAAGAAATCCTATGTGGGGAGAGGAGTTCAATTTTTCTGTTGATGACCTTCCTGTTAAGATTAATGTGACAATATATGATTGGGATATAATTTGGAAAAGTACAATTCTTGGTTCAGTGACTGTTCCAGTTGAAACTGAAGGTCAAACTGGTGCAGTGTGGTATTCATTAGATAGCACATCAGGACAAGTTTGTCTCCATATTAAAACAATAAAACTTCCTGTAAATTCTTCCAGGGTTTTGAATGGCTATTCTGGAGCTAACACTCGAAGAAGAATGTCTTCAGATAAACAAGGGCCCACTCTGGTTCATCAAAAACCTGGGCCTCTGCAAACGATATTTAACCTCCATCCAGATGAGGTTGTTGAACATAGCTATTCATGTGCCCTTGAAAGATCTTTCTTGTATCATGGTCGTATGTACGTCTCTGGATGGCACATTTGCTTCCATTCTAATGTATTTTCTAAGCAAATGAAGGTGATTATACCATTTCAAGATATAGATGAGATAAAGAGGAGTCAGCATGCATTCATTAATCCTGCTATTACAATTATTCTTCGCATGGGTGCTGGTGGGCATGGTGTACCCCCTTTGGGAAGTCCTGATGGTAGGGTCAGATATAAATTTGCATCATTTTGGAACAGAAATCATGCATTAAGAACTTTACAGCGCTTTGCAAAGAACTTCCATACAATGTTAGAAGCAGAAAAGAAGGAGAACGCAGAGTCGGAACTGCGTGCACATAGCAGCTCTATCAAAGGTAGAAGCCAGGCAAAGATTTCTGAAGATAGCTTGCCTACAGCCATAGAGTTCCAACCCTTTGTCAAAGAAGAAGCTCTAATTAGTATATATAATGATGCTTTCCCTTGTACGGCTGAGCAGTTCTTCAATATATTGTTGCATGATGATTCAAATTATATAAACGAGTATCGTCTAGCACGAAAGGATGCTAATCTTGTTGTGGGACAGTGGCATGCCACAGATGAATATGATGGCCAAGTGCGAGAGATAACATTCAGATCCCTGTGTACCAGTCCCATGTGCCCCCCAGACACAGCCATGACAGAGTATCAGCATGCTGTTGTGTCCCCAGATAAGAAAGTTTTGGTGTTTGAGACTGTGCAACAAGCTCATGATGTTCCATTCGGGTCCCATTTTGAGGTTCACTGCAAGTGGAGATTGGAGACCAATTCTGAATCCTCGTGTACAATGGAAATAAAAGCTGGTGCACATTTTAAGAAATGGTGTGTGATGCAATCCAAAATCAGATCGGGTGCAATCAATGAGTACAAGAAAGAGGTGGAGACGATGCTGGAGGTGGCTCGCTCATACATCAAGTCAAAGACTTCCGGTGGTGAGATCGAGGATGCCCCATCCTCTTCCTCCCCTGTATTACAAGATGCACTATAA 1767 42.67 MEMIEEALHFLVPTWWEVEISVVAAVFVIITYWFFTFGNGEIDESQATGEGLIGAGDLIDDNVKMGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPMWGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVCLHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHSYSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESELRAHSSSIKGRSQAKISEDSLPTAIEFQPFVKEEALISIYNDAFPCTAEQFFNILLHDDSNYINEYRLARKDANLVVGQWHATDEYDGQVREITFRSLCTSPMCPPDTAMTEYQHAVVSPDKKVLVFETVQQAHDVPFGSHFEVHCKWRLETNSESSCTMEIKAGAHFKKWCVMQSKIRSGAINEYKKEVETMLEVARSYIKSKTSGGEIEDAPSSSSPVLQDAL* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23827251 23863361 - Vvi5g1323 Vvi5g1323 787465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1323 588 ProSiteProfiles C2 domain profile. 64 176 IPR000008 -
Vvi5g1323 588 SMART C2_3c 79 175 IPR000008 -
Vvi5g1323 588 ProSiteProfiles VASt domain profile. 398 568 IPR031968 -
Vvi5g1323 588 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 76 187 IPR035892 -
Vvi5g1323 588 Pfam C2 domain 80 176 IPR000008 -
Vvi5g1323 588 SMART gram2001c 227 293 IPR004182 -
Vvi5g1323 588 MobiDBLite consensus disorder prediction 572 588 - -
Vvi5g1323 588 Pfam GRAM domain 230 299 IPR004182 -
Vvi5g1323 588 Gene3D C2 domain 59 192 IPR035892 -
Vvi5g1323 588 Gene3D - 228 347 IPR011993 -
Vvi5g1323 588 CDD C2 80 176 - -
Vvi5g1323 588 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 3 584 IPR044655 -
Vvi5g1323 588 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 3 584 - -
Vvi5g1323 588 MobiDBLite consensus disorder prediction 568 588 - -
Vvi5g1323 588 Pfam VAD1 Analog of StAR-related lipid transfer domain 402 547 IPR031968 -
Vvi5g1323 588 PRINTS C2 domain signature 95 107 IPR000008 -
Vvi5g1323 588 PRINTS C2 domain signature 119 132 IPR000008 -
Vvi5g1323 588 PRINTS C2 domain signature 140 148 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1323 - - - vvi:100261007 1201.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1323 . . . . . Bpe14g00790 . . . . . . Car06g01428 Car14g01266 . . . Bhi01g03681 . . . . . . . . . . . . . Cone14ag0618 Cone15ag0625 . Cone11ag0673 . . . . . . . Bda13g00539 . . . . . Cmo06g01677 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003689 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 0 7 2 1 46