Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1340 ATGCAATGTTGGCGTTGCTGTAATGCTTTTGATCTGAGAAAGTCAAGTATCTCTAAGATAGAAAGAGAGTCTGGAGTAAAATTTGAACCTGTATCTGCTCCTCAACCTGCTGATATTGCCAAATCTGTTGGTGTAGAAGCTACAGAATCAATCACTCAAGTTTCGGATAAGGTAATTCCTGCATTCAAATCTACTGCTGAGGAGTTCTTAAATACCTCTGATCTATCAGCCGTTGAGTTACTTGCAATGGCACTTGTAAAGGCTTTTGGTTATACTGAGATGAAGAGTAGATCATTTCTCACCACCCTGGAAAACCTTGTGACTGTATTCCTTGAGGCTAGGAAACCAATCTACATACCATCTTTTGCATATGGGGTGTTGAGAAGATTCTTACCTAAGGAAAAGGTTGGATCAATTCAGGGCCTTGCTTTCACTACTGATGGAAATGGTGCAGTGTTTGATGTAGCAACTGAAAGCTCCTGGATGCAGTTAGATAGAGGTGGATAA 507 40.63 MQCWRCCNAFDLRKSSISKIERESGVKFEPVSAPQPADIAKSVGVEATESITQVSDKVIPAFKSTAEEFLNTSDLSAVELLAMALVKAFGYTEMKSRSFLTTLENLVTVFLEARKPIYIPSFAYGVLRRFLPKEKVGSIQGLAFTTDGNGAVFDVATESSWMQLDRGG* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24041778 24042285 + Vvi5g1340 Vvi5g1340 787482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1340 168 Gene3D - 105 163 - -
Vvi5g1340 168 Pfam GUCT (NUC152) domain 90 159 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vvi5g1340 168 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 10 143 - -
Vvi5g1340 168 SUPERFAMILY RNA-binding domain, RBD 94 165 IPR035979 GO:0003676
Vvi5g1340 168 CDD GUCT_RH7_like 97 166 - -
Vvi5g1340 168 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1340 K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:3.6.4.13] - vvi:104879507 330.872
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006258 2 0 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38