Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1345 ATGGAATCAGAAGATGTGGAGCTCTCTCTCTATTTCTCTGTGTGGTGGAGCAAGGACACAGTGGCCATCGTCACAGGCGCAAACAAGGGCATCGGCTTCGCACTCGTAAAAAGGCTTGCAGAATCAGGACTAACTGTAATCCTCACCGCAAGAGACGAAGCCAGAGGCCTCAAAGCCCTCCAATCACTCGCAGCCCAAGGACTCCATGTCCATTTCTCCCTCCTAGACGTTTCAAACCCTGATTCCATCCAAACCTTTGCCTCTTGGTTCCAACACTCCTTCAGAAAACTAGACATTCTTGTGAACAATGCAGGAGTATCATTCAATAACATCAATGAAAATTCAGTCGAGCATGCTGAAGTAGTGATTAAGACTAATTATTATGGACCCAAGATGCTAATTGAGGCGCTTTTGCCCATGTTTCGTCGCTCGTCTTCTGTTAGCCGCATTCTTAATATTAGCTCGAGACTTGGATTATTGAACAAGCTGAAAAACCCTAATACTAATTCAATAAAGCTGAAAAACCCTAACATAAAAGAGATACTACTAGATGAAGAAAAACTCTCCAAGGATCAGATTGATCGCATTGTTAGCATGTTTCTAGAGAATGTGAAGACCGGGACATGGAAGAACCAAGGGTGGCCGGAGATATGGACAGACTATGCAGTGTCAAAACTTGCCCTCAATGCATACTCAAGGGTTTTAGCAAAGAGATACAAGGGGTGTGGCTTGAGTGTGAACTGCTTCTGCCCAGGCTTCACTCAGACCACCATGACAGGTGGTAAAGGTAATCATACTGCCGACGCTGCTGCCAGTATCGGCGCTAGGTTGGCCTTGCTTCCACCTGAGGAGTTACCAACCGGGAAATTTTATCTAGGGTTTAGCCCTCAAGTGTATTCCAAGTTGTAG 909 45.54 MESEDVELSLYFSVWWSKDTVAIVTGANKGIGFALVKRLAESGLTVILTARDEARGLKALQSLAAQGLHVHFSLLDVSNPDSIQTFASWFQHSFRKLDILVNNAGVSFNNINENSVEHAEVVIKTNYYGPKMLIEALLPMFRRSSSVSRILNISSRLGLLNKLKNPNTNSIKLKNPNIKEILLDEEKLSKDQIDRIVSMFLENVKTGTWKNQGWPEIWTDYAVSKLALNAYSRVLAKRYKGCGLSVNCFCPGFTQTTMTGGKGNHTADAAASIGARLALLPPEELPTGKFYLGFSPQVYSKL* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24089119 24092161 - Vvi5g1345 Vvi5g1345 787487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1345 302 Pfam Enoyl-(Acyl carrier protein) reductase 212 265 - -
Vvi5g1345 302 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 16 301 - -
Vvi5g1345 302 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 16 301 - -
Vvi5g1345 302 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Vvi5g1345 302 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Vvi5g1345 302 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vvi5g1345 302 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Vvi5g1345 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 292 IPR036291 -
Vvi5g1345 302 Pfam short chain dehydrogenase 21 159 IPR002347 -
Vvi5g1345 302 Gene3D - 16 296 - -
Vvi5g1345 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Vvi5g1345 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vvi5g1345 302 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1345 K00079 CBR1; carbonyl reductase 1 [EC:1.1.1.184 1.1.1.189 1.1.1.197] - vvi:100264726 533.872
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1345 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009036 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34