Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1347 ATGCAAGGTTTCCCAAGTGAAAATGCTTTGTCTGTTGTTGGTCCTAGGCCAGGAATGGAATTGTCTGCTGTTCCATGTACTGGGCCTCGAGCACCAGGTGCAAATGGAAAACAGCGGACATCGAGTTTAGAATCACCAATCATGTTGTTGGCAGGCCATCAAAGTGCTATATACACAATGAAATTCAATCCAACGGGTACAGTCATTGCATCTGGGTCTCATGAAAGAGAAATTTTCCTATGGTATGTTCATGGTGATTGCAAAAATTTCATGGTTTTGAAAGGGCACAAGAATGCAATTTTGGATCTTCAGTGGACTACTGATGGAACCCAGATAATATCAGCCAGCCCTGACAAGACTCTCAGGGCATGGGATGTAGAAACAGGGAAACAAATAAAAAAGATGGCTGAACACTCCTCTTTTGTGAATTCATGTTGTCCTTCCCGTAGGGGTCCTCCTCTTGTTGTCAGTGGATCTGATGATGGCACTGCCAAACTTTGGGATATGCGTCAAAGGGGTGCCATCCAGACATTTCCTGACAAATACCAAATCACAGCTGTCAGTTTCTCTGATGCATCTGATAAGATCTTCACAGGTGGGATAGACAATGATGTTAAAGTATGGGATCTGAGAAGAAATGAGGTTACCATGACTCTTCAAGGCCATCAGGATATGATAACAGAACTTGTTGAAATGTATGAACCTATTGTTGGATCTTGCAGTAGCGATAAACAGATTTATCTTGGGGAGATCTAA 756 42.59 MQGFPSENALSVVGPRPGMELSAVPCTGPRAPGANGKQRTSSLESPIMLLAGHQSAIYTMKFNPTGTVIASGSHEREIFLWYVHGDCKNFMVLKGHKNAILDLQWTTDGTQIISASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHQDMITELVEMYEPIVGSCSSDKQIYLGEI* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24119278 24122796 - Vvi5g1347 Vvi5g1347 787489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1347 251 SMART WD40_4 212 250 IPR001680 GO:0005515
Vvi5g1347 251 SMART WD40_4 86 125 IPR001680 GO:0005515
Vvi5g1347 251 SMART WD40_4 128 168 IPR001680 GO:0005515
Vvi5g1347 251 SMART WD40_4 43 82 IPR001680 GO:0005515
Vvi5g1347 251 SMART WD40_4 171 209 IPR001680 GO:0005515
Vvi5g1347 251 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 34 229 - -
Vvi5g1347 251 MobiDBLite consensus disorder prediction 21 40 - -
Vvi5g1347 251 Pfam WD domain, G-beta repeat 184 209 IPR001680 GO:0005515
Vvi5g1347 251 Pfam WD domain, G-beta repeat 130 168 IPR001680 GO:0005515
Vvi5g1347 251 Pfam WD domain, G-beta repeat 46 81 IPR001680 GO:0005515
Vvi5g1347 251 Pfam WD domain, G-beta repeat 88 125 IPR001680 GO:0005515
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 177 IPR001680 GO:0005515
Vvi5g1347 251 ProSitePatterns Trp-Asp (WD) repeats signature. 196 210 IPR019775 -
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 130 - -
Vvi5g1347 251 Gene3D - 42 251 IPR015943 GO:0005515
Vvi5g1347 251 PRINTS G protein beta WD-40 repeat signature 112 126 IPR020472 -
Vvi5g1347 251 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Vvi5g1347 251 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Vvi5g1347 251 ProSitePatterns Trp-Asp (WD) repeats signature. 155 169 IPR019775 -
Vvi5g1347 251 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 34 229 - -
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 214 - -
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 81 - -
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 134 IPR001680 GO:0005515
Vvi5g1347 251 SUPERFAMILY WD40 repeat-like 46 248 IPR036322 GO:0005515
Vvi5g1347 251 ProSitePatterns Trp-Asp (WD) repeats signature. 112 126 IPR019775 -
Vvi5g1347 251 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 218 IPR001680 GO:0005515
Vvi5g1347 251 CDD WD40 50 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1347 K12857 SNRNP40, PRP8BP; Prp8 binding protein - vvi:100267975 469.159
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011087 2 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 29