Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1348 ATGTCCATTGACTCTGAATCACCATCTCCTTCTCCAAGCAGAGACTGGTTCTTCCCTTCTCCTTCATTCATCCACCCAAACCCAAACCCAAACCCTAGGAGGTGCGTCACCAACCCTAGGATTTCCAGACCTCCCAAGCCCTCTTCATTCCAGAGCTTCTCGCATTCCAGTTCCAAATATGCCGGGATTCGCCGCAGGGTCGAGTTCGCTCGCCGGACGGAGAGCCTCCCGGCTTCGAACGTGGCTCGTCCCCTTTCCGCACAGAAACCGGACGTTCCGGTGAAGAAACCGGACGTTTCAGTGGATGTTTCGGGGGAGAAGAAATTCGCCTGGGCTTGCGCCGGCCGTTTCGGTGGTCGGTGGCGGATGGCGATTTTGGCAGCGATTTTGGCAACAGTTTTGGCCTCTTTGCTGCACAAAAACTTCTCCCTACATAACCAAATTAATGTTTTACAGGATCAGATTTATGAGCTCAATATGAGATTACAAACTTGCAATATTTTGGATTATGTTGATCTTACAAATCCTGTGCCCCAGGAGAGTGATCATCTGCCTAACAGAAACTTAAAGAATATGGCTCTGATTATTACTTTCACCCTTTTATTCATCCCCTTTCTTATTTTTAAGTATGTTGACTACGTCTCAAAATCAAGAAGATCTGCAGACAATATCTCTGAAGAAGTTTCCCTAAACAAGCAATTAGCATATCAGGTGGATGCGTTTTTATCAGTCCATCCATATGCTAAGCCATTGGCATTGCTGGTTGCCACTCTACTACTTATTTGTCTTGGTGGATTGGCTCTCTTTGGTGTGACAGTTGATAGCTTAGCTGATTGCCTATGGTTATCTTGGACATATATTGCTGATTCAGGCAACCATGCAAATTCTGAAGGAATTGGTCCAAGGCTTGTTTCAGTTTCCATTAGTTTTGGTGGGATGCTTATATTTGCAATGATGCTTGGGCTTGTTTCTGATGCAATTTCAGAGAAGTTGGACTCACTGAGGAAAGGAAGAAGTGAAGTGGTTGAACAAAACCACACTCTAATTCTTGGTTGGAGTGATAAATTGGGATCATTGCTCAATCAGCTTTCAATAGCCAATGAGAGTTTGGATGGAGGAATTGTTGTAGTGCTGGCAGAGAGAGACAAAGAGGAGATGGAACTTGACATTGCTAAAATGGAGTTTGATTTCAGAGGAACATCTGTTATATGCAGAAGTGGAAGCCCTCTGATTCTAGCTGACCTGAAGAAGGTATCTGTCTCCAAGGCCCGGGCAATTATCGTCCTTGCTGAAGATGGAAATGCTGATCAGAGTGATGCTCGTGCCTTGAGAACTGTATTAAGTCTAACAGGAGTGAAAGAAGGGCTGAGAGGACACATTGTGGTGGAACTAAGTGATCTTGACAATGAGGTTCTTGTGAAACTTGTCGGTGGAGATCTTGTTGAAACTGTTGTTGCTCATGATGTAATTGGTCGCTTGATGATTCAATGTGCTCGGCAGCCAGGTCTTGCACAGATCTGGGAAGATATCCTTGGGTTTGAAAACTGTGAATTCTACATCAAAAGATGGCCAGAGTTGGATGGCATGCAATTTGAGGATGTATTGATCAGTTTTCCTGATGCTATTCCTTGTGGAATCAAGGCTGCAGCCTACGGTGGTAAAATCATTCTGAATCCTGATGATTCTTACATTCTACAAGAAGGCGATGAAGTTCTTGTTATTGCAGAGGATGATGATACATATGCTCCAGCCACATTGCCTATGGTCAAAGAAGCATCATTCATCCACATTGCCCGACCAGCAAGAAAGCCACAGAAGATCCTACTTTGTGGATGGAGGAGGGACATTGATGATATGATTGTGGTGTGGTGCGGAAAGCTACCCAAAAACTTTATTGTTCCAAAGTCTGCAGAAAAGATTCTTTTTTGTGGTTGGCGACGAGATATGGAAGATATGATTATGGTATTGGATGCCTTCCTAGCAAATGGTTCAGAGCTCTGGATGTTCAATGATGTTCCTGAAAAGGAGAGGGAAAGGAAGCTTATCGATGGTGGTCTTGACATTAACCGGTTGTTAAATATTACATTGGTTAATCGTGAGGGAAATGCTGTAATACGGCGTCACTTGGAAAGTCTTCCTCTGGAATCTTTTGATTCAATTTTAATTTTGGCTGATGAATCGGTGGAGGATTCAGCAATTCAAGCAGATTCCAGATCTCTTGCCACATTACTTTTGATTCGTGATATTCAGGCAAAGCGTCTCCCTTACAGAGAAGCCATGGTAACCCAAGGTCACAGAGGAAGCTTCTCACAAGGCTCTTGGATAGGGGAGATGCAGCAGGCTTCAGATAAATCTGTTATAATCAGTGAAATTCTGGACCCAAGGACAAAAAACCTCTTATCCATGTCAAAGATCAGTGATTATGTTCTATCAAATGAGCTTGTTAGCATGGCATTGGCCATGGTTGCAGAGGACCGCCAGATAAATGATGTGTTGGAAGAGCTCTTCGCAGAGGAGGGAAATGAGATGCAAATAAGGCAAGCAAACCTCTATCTGCGTGAAGGCGAGGAACTAAGTTTCTATGAGATAATCTTACGTGCTCGACAGAGGAGGGAAATTGTGATTGGTTATCGCCAATCCTCTGCTGAGAGAGCCATCATCAATCCCCCAGCCAAAAACGAGAAACAGAGGTGGTCACTGAAGGATGTTTTTGTGGTAATTGCTGAGAAGGAATGA 2736 43.97 MSIDSESPSPSPSRDWFFPSPSFIHPNPNPNPRRCVTNPRISRPPKPSSFQSFSHSSSKYAGIRRRVEFARRTESLPASNVARPLSAQKPDVPVKKPDVSVDVSGEKKFAWACAGRFGGRWRMAILAAILATVLASLLHKNFSLHNQINVLQDQIYELNMRLQTCNILDYVDLTNPVPQESDHLPNRNLKNMALIITFTLLFIPFLIFKYVDYVSKSRRSADNISEEVSLNKQLAYQVDAFLSVHPYAKPLALLVATLLLICLGGLALFGVTVDSLADCLWLSWTYIADSGNHANSEGIGPRLVSVSISFGGMLIFAMMLGLVSDAISEKLDSLRKGRSEVVEQNHTLILGWSDKLGSLLNQLSIANESLDGGIVVVLAERDKEEMELDIAKMEFDFRGTSVICRSGSPLILADLKKVSVSKARAIIVLAEDGNADQSDARALRTVLSLTGVKEGLRGHIVVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPELDGMQFEDVLISFPDAIPCGIKAAAYGGKIILNPDDSYILQEGDEVLVIAEDDDTYAPATLPMVKEASFIHIARPARKPQKILLCGWRRDIDDMIVVWCGKLPKNFIVPKSAEKILFCGWRRDMEDMIMVLDAFLANGSELWMFNDVPEKERERKLIDGGLDINRLLNITLVNREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSLATLLLIRDIQAKRLPYREAMVTQGHRGSFSQGSWIGEMQQASDKSVIISEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMQIRQANLYLREGEELSFYEIILRARQRREIVIGYRQSSAERAIINPPAKNEKQRWSLKDVFVVIAEKE* 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24126798 24139086 + Vvi5g1348 Vvi5g1348 787490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1348 911 MobiDBLite consensus disorder prediction 42 58 - -
Vvi5g1348 911 PANTHER ION CHANNEL POLLUX-RELATED 8 622 IPR044849 GO:0006811
Vvi5g1348 911 PANTHER ION CHANNEL POLLUX-RELATED 622 911 IPR044849 GO:0006811
Vvi5g1348 911 MobiDBLite consensus disorder prediction 1 58 - -
Vvi5g1348 911 PANTHER ION CHANNEL CASTOR-RELATED 8 622 - -
Vvi5g1348 911 PANTHER ION CHANNEL CASTOR-RELATED 622 911 - -
Vvi5g1348 911 Pfam Castor and Pollux, part of voltage-gated ion channel 487 585 IPR010420 -
Vvi5g1348 911 Gene3D - 336 481 - -
Vvi5g1348 911 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 345 493 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1348 K21866 POLLUX, DMI1, CASTOR; ion channel POLLUX/CASTOR - vvi:100254139 1632.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011722 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30