Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1349 ATGTTGCCTGTTTGTTCAGCCACCACTAGCTGTTCTTCTCATTCTCAGATTTCCTTCCATGGAGGGTCACGATCCTTTTCTCCATCCCGGAAGACTTTTGAGATTAGATGCCTTGCGGAAGACAGGGTTGTTTTAGGCTTGTCAAGTGGAGTTCATGCTCATGGAGTTTCCTTAAAAGCACAAGTTTCAAAATTGTCTAATTCTAGTTTTGTTGACAGTATTGAAAAATCAAGCTCTACAGAGCCTACCAGCATTTTTTCCTGCCCAAATGTATTTGACGGCCTTGAATGCAGATCCACTGATAAGTTTGTGGACAGTTCTGGTCTGTCTGGCACAGAAGAGAAGCTAGTGGACTACATGGACCAGTTAACTGAAAATGCAAATATTTTATCAGGAGCTCCTAATCTAGAAACCATATCAACCACTGATATCATTCCAAATAATCCCAACTCAGTATCTGACTCCTTTGGCATGGATAACGGTTCATTATCCAGTTTGAAAACCAATGCAGGAGACCTTTTTTCAGGGATCAATGAGTCCATAGGCAGTTCTGTTGATAAGGGACAAAGTGCTGTAAAAACCTCACTGGATACAATTACGTCTTCAATAACATCTGCTATCAATAGTGCTACTGATGCTGTTGATACTGCTGTTAGTAAAGTGTTTTCAAGTGTCGACCAAGCGGGGGAATTGGCTAATGATAGAGTGGTGAGCTTCTCAAATGACTTGAAGGAGGCCACTAGTAAAGTGGGTGCTACTGCTATTGATGTTTTAAGACATGGTATTGTTCTAGTGGAGGATTCTTTAGCAAATGGGGCCAGTTTTGCTGCTTATTCTTATGGATCTGCTAAGGAGTTGCTTCCTACAGAGATCCGGAATGTGGTAAATTTGTCTGAAGAGAAAGTATTAGAAATCTTGAGGCCTGCTGGCGCAGCCTTGCAACAGTTCTATGTTGCTGTTGAGGGGTTGGAGAGAAACCTTGGTTTGGATCCCAGTGATCCAATTGTGCCTTTCGTTCTTTTCCTTGGAACCTCAGCCACTTTGTGGGTTTTTTACTGGAGACTAACTTATGGTGGTTATTCTGGTGATATATCACCTCAATTGACATTGGAGCTCTTGAAAGGGAAGGAGAATGTTGTACTAGTTGATGTCCGGCCTGAGGATCTGAGGGAAAGGGATGGAATTCCTGATCTTCGGCGAGCAGCTCGATTTCGATATGCAAGTGTAACTCTACCTGAGTTCAACAGCTCTGTACGAAAGTTATTGAAGAGTGGAAGAGACCTTGATGACTCCTTGATTGCTGCTGTCATTCGGAACTTAAAGATTGTTCAAGACAGGTCCAAGGTCATAGTTCTGGATGCTGATGGTAGTCGTTCCAAAGGCATTGCAAGATCTTTGAGGAAACTTGGGGTTAAGAGGCCATACCTGGTCCAAGGTGGCTTTCAGTCTTGGGTGAAACAGGGTTTCCGTGTTAAAGAGCTCAAACCTGAGACAACACTTACCATACTTAATGAGGAAGCAGAGGCAATCATAGAAGATATCAATCCTACTCCAGTAAAACTTCTTGGATATGGTGTGGGTCTTATTGCGGCAGTGTATGCATCAATAGAGTGGGAAAAGACACTACAATTTATTGGCATTTTTGGCCTTGGTCAGACCATTTATCGGCGAGTTGCTGCTTATGAGGGACCTGAAGATTTTAAGCAAGACGTGAGGTTGTTGCTCACTCCTGTTAGACTTGGAGCTCAAGCATATTCATGGGCTGCCGGGAAATTAGAATCAAATGGCATTGGACTACCAACATCTCCTTCATCCTTAGATGTTCAAAACCGGGTATTGCAGGCAGCTGCAAAACATGAATCTCAGCCCTCCGACACTGAAGAAACACAAGACCCATTTCCAGATTCAGCGGGTGCTGTTACTGAGAGTGTAGACCTCTCTGAAGCATAG 1950 43.33 MLPVCSATTSCSSHSQISFHGGSRSFSPSRKTFEIRCLAEDRVVLGLSSGVHAHGVSLKAQVSKLSNSSFVDSIEKSSSTEPTSIFSCPNVFDGLECRSTDKFVDSSGLSGTEEKLVDYMDQLTENANILSGAPNLETISTTDIIPNNPNSVSDSFGMDNGSLSSLKTNAGDLFSGINESIGSSVDKGQSAVKTSLDTITSSITSAINSATDAVDTAVSKVFSSVDQAGELANDRVVSFSNDLKEATSKVGATAIDVLRHGIVLVEDSLANGASFAAYSYGSAKELLPTEIRNVVNLSEEKVLEILRPAGAALQQFYVAVEGLERNLGLDPSDPIVPFVLFLGTSATLWVFYWRLTYGGYSGDISPQLTLELLKGKENVVLVDVRPEDLRERDGIPDLRRAARFRYASVTLPEFNSSVRKLLKSGRDLDDSLIAAVIRNLKIVQDRSKVIVLDADGSRSKGIARSLRKLGVKRPYLVQGGFQSWVKQGFRVKELKPETTLTILNEEAEAIIEDINPTPVKLLGYGVGLIAAVYASIEWEKTLQFIGIFGLGQTIYRRVAAYEGPEDFKQDVRLLLTPVRLGAQAYSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDTEETQDPFPDSAGAVTESVDLSEA* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24139970 24151147 - Vvi5g1349 Vvi5g1349 787491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1349 649 Pfam Rhodanese-like domain 371 486 IPR001763 -
Vvi5g1349 649 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 347 493 IPR036873 -
Vvi5g1349 649 SMART rhod_4 365 490 IPR001763 -
Vvi5g1349 649 MobiDBLite consensus disorder prediction 614 649 - -
Vvi5g1349 649 CDD RHOD 369 485 - -
Vvi5g1349 649 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 1 649 IPR044690 GO:0009704|GO:0071277|GO:0090333
Vvi5g1349 649 Gene3D - 359 495 IPR036873 -
Vvi5g1349 649 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 1 649 - -
Vvi5g1349 649 ProSiteProfiles Rhodanese domain profile. 375 493 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1349 - - - vvi:100249037 1215.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006613 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 7 1 37