Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1352 ATGCACACAACTAATACAATTTCTATTCTTTTTTATGTTATTGTTATAAATTCTGAAAGACCAATTAAGAAGAGAATAATAGAGCGAGGAGGAAGAGATCTGAGACTCAGCACCAGTAGATCTGTGGATCATTCAGGAGAGGGTAATGTTATAGATTGCAAGATGTCTTCTGCTCAGGATCCATTTTATATTGTGAAAGAGGAGATTCAAGAATCTATTGATAAATTGCTATCTACTTTTCACCAATGGGAACGCATTCCTGTGGAAACCGGAGAGCAAGTACATCTCACAAAGGAGCTGCTTGCTAGTTGTGAAAGCATTGAGTGGCAGGTAGATGAATTGGACAAAACAATTTCCGTAGCAGCAAAAGACCCTGCTTGGTATGGCATTGACGAAGTGGAACTTGATAAAAGGAGGCGATGGACCAGCACAGCTCATACCCAGGTGAGCAATGTGAAGAAATCAGTAGTAGCTGGAAAAGAATCAAATGGTACGGGCACAGCTAATGTGAATGGAATGCGCCGGGAAATGATGAGGATGTCAAATCCTCATCAGGCGGATAGATCTAATCAGTATGGCTCCCAAGATAATGATGATTTCATATCATCTGAATCAGATCGACAGTTGCTTCTCATAAGGCGACAGGATGAGGAGCTGGATGTGCTTAGTGCAAGTGTGGAAAGAATTGGAGGAGTTGGGCTTACCATACACGAAGAACTCCTTGCACAGGAGAAAATTATAGATGAATTGGGCAGTGAGATGGACAGTACTTCAAATCGGCTTGATTTTGTTCAGAAAAAGGTAGCTATGGTGATGAAGAAGGCGAGCGCCAAGGGCCAGATCATGATGATATTATTCTTGGTGGTTCTATTCATTGTCCTCTTTGTTTTGGTCTTCCTTACCTAG 906 41.61 MHTTNTISILFYVIVINSERPIKKRIIERGGRDLRLSTSRSVDHSGEGNVIDCKMSSAQDPFYIVKEEIQESIDKLLSTFHQWERIPVETGEQVHLTKELLASCESIEWQVDELDKTISVAAKDPAWYGIDEVELDKRRRWTSTAHTQVSNVKKSVVAGKESNGTGTANVNGMRREMMRMSNPHQADRSNQYGSQDNDDFISSESDRQLLLIRRQDEELDVLSASVERIGGVGLTIHEELLAQEKIIDELGSEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLVVLFIVLFVLVFLT* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24193636 24200956 - Vvi5g1352 Vvi5g1352 787494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1352 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Vvi5g1352 301 PANTHER SYNTAXIN-61 55 300 - -
Vvi5g1352 301 SMART tSNARE_6 204 271 IPR000727 -
Vvi5g1352 301 PANTHER SYNTAXIN 55 300 IPR045242 -
Vvi5g1352 301 Gene3D - 216 280 - -
Vvi5g1352 301 SUPERFAMILY SNARE fusion complex 208 271 - -
Vvi5g1352 301 CDD SNARE_Qc 212 269 - -
Vvi5g1352 301 Coils Coil 247 267 - -
Vvi5g1352 301 Gene3D - 56 158 - -
Vvi5g1352 301 Pfam SNARE domain 246 297 IPR000727 -
Vvi5g1352 301 Pfam Syntaxin 6, N-terminal 60 153 IPR015260 GO:0016020|GO:0048193
Vvi5g1352 301 SUPERFAMILY t-snare proteins 59 156 IPR010989 GO:0016020|GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1352 K08500 - vvi:100257700 439.884