Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1355 ATGATGCCCAGATGCTCCATTTCACCATCCAGTGATGTTCAGCTCTTCCACACCTTCAATGGGATTCAACAACTTTCTCAAACTCATCATTTCAAGGCATGGTTCTTAGATCAATTTGGAGTCCTTCATGATGGGAAGCAACCTTATCCTGGTGCAATCTCAACATTGGAAAAGCTGGCCACCAGTGGTGCCAAGATGGTGATTATCAGTAATTCTTCAAGGCGTTCGTCAATTACCATCGAAAAAATGAAGAGCCTTGGCTTTGATCCTTCTCTTTTCGTAGGAGCAATCACTAGTGGAGAATTAACGCATCAGCACCTACTCAGGAGAGATGATGCTGGGTTTGCAAAATTGGGAAGATCCTGTATTCACATGACCTGGAGTGACCGGGGTGCTATATCTCTTGAGGGCCTTGGCTTGCAAGTTGTGGATAAAGTTGAAGAAGCTGAGTTTGTTTTGGCCCATGGCACTGAAGCCTTGGGGCTCCCTTCCGGTGCTGTACTCCCCATGAAACTTGAGGATCTTGAGAAAATATTGGGGCGTTGTGCAGCCAAAAATATCCCTATGGTGGTAGCAAATCCAGATTTTGTGACTGTTGAAGCTAGAGCTTTTTGTGTCATGCCTGGTGCGTTGGCAGCCAAATATGAAAAACTTGGGGGTGAAGTAAAATGGATGGGAAAGCCTGACAAGATAATCTATAAATCAGCTATGGCCATGGTTGGTGTAGATGCTTCAGATTGTATTGCTGTGGGCGATTCCCTCCACCACGACATAAAGGGTGCAAATGTAGCTGGGATCCAATCAGCATTCATCACAGGCGGTATCCATGCAAATGAACTTGGGCTTGGCAGTTTTGGAGAAGTTGCAGATTCATCTTCTGTGCAAGCTCTTGCATCCAAATATGATGCACATCCATCATATGTATTACCTGCATTTTCATGGTAG 945 44.97 MMPRCSISPSSDVQLFHTFNGIQQLSQTHHFKAWFLDQFGVLHDGKQPYPGAISTLEKLATSGAKMVIISNSSRRSSITIEKMKSLGFDPSLFVGAITSGELTHQHLLRRDDAGFAKLGRSCIHMTWSDRGAISLEGLGLQVVDKVEEAEFVLAHGTEALGLPSGAVLPMKLEDLEKILGRCAAKNIPMVVANPDFVTVEARAFCVMPGALAAKYEKLGGEVKWMGKPDKIIYKSAMAMVGVDASDCIAVGDSLHHDIKGANVAGIQSAFITGGIHANELGLGSFGEVADSSSVQALASKYDAHPSYVLPAFSW* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24209210 24217405 + Vvi5g1355 Vvi5g1355 787497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1355 314 Gene3D - 35 308 IPR023214 -
Vvi5g1355 314 Pfam Haloacid dehalogenase-like hydrolase 35 120 IPR006357 -
Vvi5g1355 314 PANTHER 4-NITROPHENYLPHOSPHATASE-RELATED 12 313 - -
Vvi5g1355 314 Pfam HAD-hyrolase-like 225 279 - -
Vvi5g1355 314 Gene3D - 117 225 IPR023214 -
Vvi5g1355 314 TIGRFAM HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 30 272 IPR006356 -
Vvi5g1355 314 SUPERFAMILY HAD-like 31 280 IPR036412 -
Vvi5g1355 314 PANTHER HAD SUPERFAMILY PROTEIN INVOLVED IN N-ACETYL-GLUCOSAMINE CATABOLISM-LIKE 12 313 - -
Vvi5g1355 314 TIGRFAM HAD-SF-IIA: HAD hydrolase, family IIA 36 273 IPR006357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1355 - - - vvi:100247455 624.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007016 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36