Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g1356 | ATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAATGATGTTTACATTGCATATGAGCTAATGGATACTGACCTTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATGTTCTTCACAGGGACTTAAAGCCTAGCAATCTCCTCCTGAATGCCAATTGTGATTTGAAAATATGTGATTTTGGGCTAGCTCGTGTCACCTCTGAAACTGATTTCATGACAGAATATGTTGTTACGAGATGGTACCGAGCTCCAGAGCTGTTGTTGAACTCTTCAGATTACACTGTGGCCATTGATGTATGGTCAGTAGGTTGCATTTTCATGGAATTGATGGATCGGAAGCCTTTGTTTCCTGGCAGAGATCATGTGCATCAGCTACGTTTGCTTATGGAGCTGATTGGCACCCCATCAGAGGCTGAGTTGGGGTTTTTGAATGAAAATGCAAAGAGATACATTCGGCAACTTCCTATTTACCGTCGGCAGACATTCACTGAAAAGTTCCCACAAGTTCACCCTGTAGCTATCGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTGATGAGCCTATATGCACGACTCCCTTCAGCTTCGATTTTGAGCAGCACGCACTGTCCGAAGAGCAGATGAAGGAGCTCATCTACCGAGAGGCACTCGCATTTAACCCCGAGTATCAGAACTATTGA | 993 | 44.81 | MPIGKGAYGIVCSALNSETNEHVALKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQRTAFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTVAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEAELGFLNENAKRYIRQLPIYRRQTFTEKFPQVHPVAIDLVEKMLTFDPRQRITVEEALAHPYLTSLHDISDEPICTTPFSFDFEQHALSEEQMKELIYREALAFNPEYQNY* | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24220237 | 24241107 | + | Vvi5g1356 | Vvi5g1356 | 787498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g1356 | 330 | ProSitePatterns | MAP kinase signature. | 32 | 135 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Vvi5g1356 | 330 | ProSiteProfiles | Protein kinase domain profile. | 1 | 282 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g1356 | 330 | CDD | STKc_TEY_MAPK | 2 | 325 | - | - | |
Vvi5g1356 | 330 | ProSitePatterns | Protein kinases ATP-binding region signature. | 3 | 26 | IPR017441 | GO:0005524 | |
Vvi5g1356 | 330 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 1 | 328 | - | - | |
Vvi5g1356 | 330 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 290 | IPR011009 | - | |
Vvi5g1356 | 330 | Pfam | Protein kinase domain | 2 | 282 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g1356 | 330 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 319 | - | - | |
Vvi5g1356 | 330 | SMART | serkin_6 | 1 | 282 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g1356 | 330 | Gene3D | Transferase(Phosphotransferase) domain 1 | 81 | 309 | - | - | |
Vvi5g1356 | 330 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 1 | 328 | - | - | |
Vvi5g1356 | 330 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 119 | 131 | IPR008271 | GO:0004672|GO:0006468 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76651 | PF00069 | Pkinase | 3.20E-73 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g1356 | K14512 | - | vvi:100242320 | 671.774 |