Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1356 ATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAATGATGTTTACATTGCATATGAGCTAATGGATACTGACCTTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATGTTCTTCACAGGGACTTAAAGCCTAGCAATCTCCTCCTGAATGCCAATTGTGATTTGAAAATATGTGATTTTGGGCTAGCTCGTGTCACCTCTGAAACTGATTTCATGACAGAATATGTTGTTACGAGATGGTACCGAGCTCCAGAGCTGTTGTTGAACTCTTCAGATTACACTGTGGCCATTGATGTATGGTCAGTAGGTTGCATTTTCATGGAATTGATGGATCGGAAGCCTTTGTTTCCTGGCAGAGATCATGTGCATCAGCTACGTTTGCTTATGGAGCTGATTGGCACCCCATCAGAGGCTGAGTTGGGGTTTTTGAATGAAAATGCAAAGAGATACATTCGGCAACTTCCTATTTACCGTCGGCAGACATTCACTGAAAAGTTCCCACAAGTTCACCCTGTAGCTATCGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTGATGAGCCTATATGCACGACTCCCTTCAGCTTCGATTTTGAGCAGCACGCACTGTCCGAAGAGCAGATGAAGGAGCTCATCTACCGAGAGGCACTCGCATTTAACCCCGAGTATCAGAACTATTGA 993 44.81 MPIGKGAYGIVCSALNSETNEHVALKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQRTAFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTVAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEAELGFLNENAKRYIRQLPIYRRQTFTEKFPQVHPVAIDLVEKMLTFDPRQRITVEEALAHPYLTSLHDISDEPICTTPFSFDFEQHALSEEQMKELIYREALAFNPEYQNY* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24220237 24241107 + Vvi5g1356 Vvi5g1356 787498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1356 330 ProSitePatterns MAP kinase signature. 32 135 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi5g1356 330 ProSiteProfiles Protein kinase domain profile. 1 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1356 330 CDD STKc_TEY_MAPK 2 325 - -
Vvi5g1356 330 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
Vvi5g1356 330 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 328 - -
Vvi5g1356 330 SUPERFAMILY Protein kinase-like (PK-like) 3 290 IPR011009 -
Vvi5g1356 330 Pfam Protein kinase domain 2 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1356 330 Gene3D Phosphorylase Kinase; domain 1 5 319 - -
Vvi5g1356 330 SMART serkin_6 1 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1356 330 Gene3D Transferase(Phosphotransferase) domain 1 81 309 - -
Vvi5g1356 330 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 328 - -
Vvi5g1356 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76651 PF00069 Pkinase 3.20E-73 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1356 K14512 - vvi:100242320 671.774