Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1361 ATGAGTACAGGAGGAGAGAAAGGGTCTGCAACCACAAAAACTCCAGCAGATTTCCTCAAGTCAATTCGTGGGCGACCTGTTGTTGTTAAGCTTAACTCTGGTGTGGATTATCGTGGTATTCTAGCTTGTCTTGACGGATATATGAACATAGCAATGGAGCAAACAGAAGAGTACGTCAATGGGCAGCTAAAAAACAAATATGGCGATGCTTTTATCCGTGGAAATAATGTTCTGTACATTAGTACATCCAAGAGGACCCTGGCTGAGGGCGCTTAG 276 43.84 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA* 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24271159 24276761 + Vvi5g1361 Vvi5g1361 787503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1361 91 SMART Sm3 17 82 IPR001163 -
Vvi5g1361 91 PIRSF snRNP_SmF 5 90 - -
Vvi5g1361 91 SUPERFAMILY Sm-like ribonucleoproteins 14 82 IPR010920 -
Vvi5g1361 91 CDD LSm6 14 81 - -
Vvi5g1361 91 PANTHER SM-LIKE PROTEIN LSM36B-RELATED 1 91 - -
Vvi5g1361 91 Pfam LSM domain 17 81 IPR001163 -
Vvi5g1361 91 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F 1 91 IPR016487 GO:0000398
Vvi5g1361 91 Gene3D - 5 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1361 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 - vvi:100259432 183.726
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1361 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001070 5 1 3 4 4 1 4 2 1 2 2 2 4 2 2 4 2 4 4 2 2 2 2 1 2 2 1 4 3 1 75