Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1362 ATGGCTTCACCAGATCTTGTTTCTTCCTTACCATGCTCAACTGGTGAATCCTTCAGTGGATCATTCAATATAGCCATAGAAGAAACAAGTCCAGCCAATTTTTTACCAGTGCTGGAAGTTTCCAACTCGTCTGTGTGCAATAACAGTAACATCCCCAAACCACCTCCACTCCCTGGTAAAACCTATACGAAAACAAGTTATCCCAAAAGGCTTGCGAACTGTAGTTCTGTCCCAAGAGAAACAAAAGATACATGGGACAAGCTCTTTAAGGACGGATATGGAGCAGATATTCATATTATCACAGAAGATGGCCCTATTATTCCAGCTCATTCTTGTGTTCTGGGTGTAGCATCACCAGTACTGGGGAATTTTCTACAGCTATCAAAAGTTAAGAAGGGAATAAGATACATTAAGATTCCTGGGGTACCTTGTGAAGCTGCATATGCTTTTATTCGGTTCCTTTACTCATCCAGCTTTGAAGAGGAAGAAATGAAGAAATTTGTTCTCCACTTGTTGGTTTTATCACACTCCTATTCAGTTCCATCTCTGAAAAGGCTTTGTGCACACCATCTGGAGCAAGGATGGATGACACCTGAAAACCTCATAGATGTGCTTCAGTTAGCTAGGAAGTGTGATGCACCCCGTCTTTCCCTCATCTGCACCCGCATGATTGTGAAGGATTTCAAAACTATATCTTCAACCCAAGGATGGAAAGTAATGAAGCGTGTAGATCCTGCACTTGAACAAGAGCTGCTGGAGGCAGTTGTTGAAGCTGATTCCAGGAAAGAGGAGAGATTGAAGAAGATAGAAGAGAAAAAGGTGTACTTGCAACTGCACGAGGCCATGGAGGCCCTCCTTCACATATGCAGAGACGGATGCAGGACGATTGGGCCTCGTGACAAGGTACTGAAAGGAAGCCAGGTTGCTTGTGGCTTCCCAGCCTGCAAAGGGCTTGAGACTTTAGTCCGCCATTTCTCCAGCTGCAAGACCCGAGTCCCCGGCGGATGTGTTCACTGCAAGCGCATGTGGCAGCTTCTTGAACTGCACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGGCATTTCAAGGAAAAGATGCAGCAACAGAGTAAGAAAGACGAGACAAAATGGAAACTATTGGTTAGCAAAGTGATAGCAGTGAAGAATTCACTGGGGCCATTCCCAGCTCGCAGCTCAGGTTTACTATGA 1224 45.34 MASPDLVSSLPCSTGESFSGSFNIAIEETSPANFLPVLEVSNSSVCNNSNIPKPPPLPGKTYTKTSYPKRLANCSSVPRETKDTWDKLFKDGYGADIHIITEDGPIIPAHSCVLGVASPVLGNFLQLSKVKKGIRYIKIPGVPCEAAYAFIRFLYSSSFEEEEMKKFVLHLLVLSHSYSVPSLKRLCAHHLEQGWMTPENLIDVLQLARKCDAPRLSLICTRMIVKDFKTISSTQGWKVMKRVDPALEQELLEAVVEADSRKEERLKKIEEKKVYLQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACGFPACKGLETLVRHFSSCKTRVPGGCVHCKRMWQLLELHSRMCSEPDCCKVPLCRHFKEKMQQQSKKDETKWKLLVSKVIAVKNSLGPFPARSSGLL* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24276951 24279902 - Vvi5g1362 Vvi5g1362 787504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1362 407 SMART BTB_4 95 195 IPR000210 GO:0005515
Vvi5g1362 407 Pfam BTB/POZ domain 87 193 IPR000210 GO:0005515
Vvi5g1362 407 Gene3D TAZ domain 271 393 IPR035898 -
Vvi5g1362 407 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 14 404 IPR044513 -
Vvi5g1362 407 Pfam TAZ zinc finger 279 364 IPR000197 -
Vvi5g1362 407 Gene3D Potassium Channel Kv1.1; Chain A 73 194 IPR011333 -
Vvi5g1362 407 SMART TAZ_2 272 365 IPR000197 -
Vvi5g1362 407 Coils Coil 252 272 - -
Vvi5g1362 407 CDD BACK 197 257 - -
Vvi5g1362 407 SUPERFAMILY POZ domain 74 193 IPR011333 -
Vvi5g1362 407 Gene3D - 196 270 - -
Vvi5g1362 407 ProSiteProfiles BTB domain profile. 95 163 IPR000210 GO:0005515
Vvi5g1362 407 ProSiteProfiles Zinc finger TAZ-type profile. 269 367 IPR000197 -
Vvi5g1362 407 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3 14 404 - -
Vvi5g1362 407 SUPERFAMILY TAZ domain 272 373 IPR035898 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1362 - - - vvi:100254312 795.808
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005133 1 1 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14828 PF00651 BTB 4.90E-11 CL0033 Vvi TR