Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1365 ATGCACATGCATTGTATAATTATCAAAAATTTGGAAAGATCAGGAAATAAATGTGAGAACACTCTAGTCATGGTGAATTTTCTGTGTAGTTGGGAAGATGCTGTCAAATTTTCTCTGGTATCAACTTTGATTCATTATTTTCTGTTTTGGTTGCAGGTTGTATGCAGAGATTACCCTCACTCACGGGACCAATGTGCTAAATTTCCTTTTAATTCTACCACACATGATAGGCACTGTGACCAGTGCCATTGTTATGTCTGCGATTCGCTTGCCCCTTGTGGCCATTGGGGGACTGGTATGAACATTGTTGACCATTGTCATGCCACTAATAAAGATCAGTTTTGGGTAAATCAGATGAAAAGTTTCAGGCTAGGGAAAAGTCAGCAAGTACCTATTCAAAAACACGCCACAGCATTGCCCCAAGATGATTCATATCTCGAGAGTTACATAAGCACCATTGGGGTTGACTTTAAAATTCGCACTGTGGAACAGGATGGAAAGACCATCAAACTGCAAATTTGGGACACTGCTGGGCAAGAACGTTTTAGGACGATCACTAGCAGCTACTATCGTGGAGCACATGGAATTATTGTGGTTTATGATGTGACGGATCAAGAAAGCTTGCTCTATTTTGTGAATCAAAAGCCAACGAACTTAGTCCAACAGCAATGTAAATGA 678 40.41 MHMHCIIIKNLERSGNKCENTLVMVNFLCSWEDAVKFSLVSTLIHYFLFWLQVVCRDYPHSRDQCAKFPFNSTTHDRHCDQCHCYVCDSLAPCGHWGTGMNIVDHCHATNKDQFWVNQMKSFRLGKSQQVPIQKHATALPQDDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESLLYFVNQKPTNLVQQQCK* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24301233 24306993 - Vvi5g1365 Vvi5g1365 787507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1365 225 Pfam Ras family 142 209 IPR001806 GO:0003924|GO:0005525
Vvi5g1365 225 Gene3D - 123 222 IPR027417 -
Vvi5g1365 225 TIGRFAM small_GTP: small GTP-binding protein domain 147 203 IPR005225 GO:0005525
Vvi5g1365 225 PRINTS Transforming protein P21 ras signature 144 160 - -
Vvi5g1365 225 PRINTS Transforming protein P21 ras signature 162 184 - -
Vvi5g1365 225 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 142 208 - -
Vvi5g1365 225 PANTHER LD21953P-RELATED 142 208 - -
Vvi5g1365 225 ProSiteProfiles small GTPase Rab1 family profile. 110 225 - -
Vvi5g1365 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 214 IPR027417 -
Vvi5g1365 225 SMART rab_sub_5 141 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1365 K07874 RAB1A; Ras-related protein Rab-1A - vvi:100258397 201.445
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1365 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014098 2 0 2 0 1 0 1 0 0 0 0 0 1 0 0 1 0 4 0 0 0 1 1 1 1 0 1 1 1 3 22