Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1375 ATGCAGATGCTGTTTATGGCGTGTAGAGGGGATGTGAAGGGAGTGGAGGATTTGTTGAACGAAGGCACTGATGTGAACAGCATCGATTTGGATGGCCGCACTGCTCTGCATATCGCGGCCTGTGAAGGTCAGATTGAGGTAGTTAAGCTCCTGCTCAGTCGGAAGGCCAACATCGATGCTCGTGACCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATACTATGGAAATGTAGAAATTTATAATATTTTGAAGGCTCGGGGAGCCAAAACTCCGAAAATCAGGAAGACGCCAATGGCTGTTGCAAATCCTCGAGAAGTTCCAGAGTATGAGCTTAATCCATTAGAGCTTCAGGTCCGCAAAAGTGATGGTATCACAAAGGGATCATACCAAGTAGCTAAATGGAATGGTACAAAGGTTTCTGTAAAGATACTTGATAAGGACAGCTATTCAGACCCCGATAGCATAAATGCTTTCAAATATGAGCTAACCTTATTAGAAAAGGTCCGGCATCCAAATGTGGTTCAGTTTGTTGGAGCTGTTACCCAAAATATACCCATGATGATTGTTTCAGAGTATCATCCGAAAGGTGACCTGGGAAGCTATCTTCAAAAGAAAGGGCGTCTATCTCTATCTAAAGCTCTAAGATATGCTCTTGATATTGCCAGGGGCATGAATTATCTACATGAATGCAAACCAGACCCAGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAGTGGAGGTCAGTTGAAGGTTGCCGGATTTGGTTTATTAAGGCTGTCAAAGATGTCACCTGACAAAGTAAAATTAGCGCAATCAGGGAGTCACATTGATGCTTCAAATGTATATATGGCACCTGAGGTTTATAGAGATGAACTATTTGACAGAAGTGTGGATTCATTCTCTTTCGGTCTCATACTTTATGAGATGATTGAAGGAGTACAGCCCTTTCACCCAAAACCTCCAGAAGAAGCCATCAAAATGATCTGTTTAGAAGGAAAGAGACCACCTTTCAAGAGCAAATCAAGAAGTTATCCTCCAGATTTAAAAGAGTTGATCGAGGAATGTTGGAATCCGGAACCTGTTGTTCGGCCAATCTTTTCTGAGGTCATAGTACGGTTGGATAAAATTGTTGGACATTGCTCTAGACAAGCATGGTGGAAAGACACTTTCAAGCTTCCTTGGAAATAA 1203 42.31 MQMLFMACRGDVKGVEDLLNEGTDVNSIDLDGRTALHIAACEGQIEVVKLLLSRKANIDARDRWGSTAAADAKYYGNVEIYNILKARGAKTPKIRKTPMAVANPREVPEYELNPLELQVRKSDGITKGSYQVAKWNGTKVSVKILDKDSYSDPDSINAFKYELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLGSYLQKKGRLSLSKALRYALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKVAGFGLLRLSKMSPDKVKLAQSGSHIDASNVYMAPEVYRDELFDRSVDSFSFGLILYEMIEGVQPFHPKPPEEAIKMICLEGKRPPFKSKSRSYPPDLKELIEECWNPEPVVRPIFSEVIVRLDKIVGHCSRQAWWKDTFKLPWK* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24408618 24418389 - Vvi5g1375 Vvi5g1375 787517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1375 400 ProSiteProfiles Ankyrin repeat profile. 31 63 IPR002110 GO:0005515
Vvi5g1375 400 SUPERFAMILY Ankyrin repeat 3 96 IPR036770 -
Vvi5g1375 400 ProSiteProfiles Ankyrin repeat region circular profile. 31 63 - -
Vvi5g1375 400 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 398 - -
Vvi5g1375 400 ProSiteProfiles Protein kinase domain profile. 115 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1375 400 SUPERFAMILY Protein kinase-like (PK-like) 131 378 IPR011009 -
Vvi5g1375 400 SMART ANK_2a 31 60 IPR002110 GO:0005515
Vvi5g1375 400 SMART ANK_2a 64 94 IPR002110 GO:0005515
Vvi5g1375 400 Pfam Ankyrin repeats (3 copies) 5 89 IPR002110 GO:0005515
Vvi5g1375 400 CDD STKc_MAP3K-like 125 378 - -
Vvi5g1375 400 Gene3D - 1 109 IPR036770 -
Vvi5g1375 400 Pfam Protein tyrosine and serine/threonine kinase 126 377 IPR001245 GO:0004672|GO:0006468
Vvi5g1375 400 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 8 398 - -
Vvi5g1375 400 PIRSF ILK 1 399 - -
Vvi5g1375 400 Gene3D Phosphorylase Kinase; domain 1 115 194 - -
Vvi5g1375 400 SMART serkin_6 119 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1375 400 Gene3D Transferase(Phosphotransferase) domain 1 195 394 - -
Vvi5g1375 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76652 PF07714 PK_Tyr_Ser-Thr 1.30E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1375 - - vvi:100244046 813.913