Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1377 ATGGCCCTGGTGAGAGCTCGCGCGGCTTCGTCAACTCTCTTGAAGAGGCTTCTCTTCCCCTCCGTTGCCAACCCTAGTCATCGCAATCTCTCCTCTGTTGCAAAGGATTCGCCTCATGATGCTTTCCGCGAGAGCATGATGAACCAGATGTTCAGTCTGGACATAAATTCCCAAATTGGAAGTTGCATGCCACTTGCAGCAATGAGAATTGGAACTATAATCCATAACATTGAGATAAACCCGGGTCAAGGTGGAAAACTTGTGCGAGCAGCTGGAACATCTGCAAAGCTACTGAAAGAGCCAACATCAAGATACGTTTTAGTGAGAATGCCTTCTGGTGTCCAGAAACTGATCGATACAAGATGTCGAGCCACTATTGGCACTGTTTCAAACCCGGGTCATGGGGCTAAGAAGCTTAGGAAAGCTGGGCAGAGCCGGTGGTTGGGTAGAAGGCCGGTGGTTCGTGGTGTAGCGATGAATCCTGTAGATCATCCTCATGGAGGAGGAGAGGGGCGAAGCAAAAGTGGTGGGAGCCATGGGAGGGGTTCCTTAACACCATGGGGCAAGCCAACAAAGTGTGGGTACAAAACTGGACCACTCAAGCGCAGAAAGTAG 615 50.41 MALVRARAASSTLLKRLLFPSVANPSHRNLSSVAKDSPHDAFRESMMNQMFSLDINSQIGSCMPLAAMRIGTIIHNIEINPGQGGKLVRAAGTSAKLLKEPTSRYVLVRMPSGVQKLIDTRCRATIGTVSNPGHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSGGSHGRGSLTPWGKPTKCGYKTGPLKRRK* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24441628 24443684 - Vvi5g1377 Vvi5g1377 787519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1377 204 ProSitePatterns Ribosomal protein L2 signature. 152 163 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vvi5g1377 204 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 52 204 - -
Vvi5g1377 204 PANTHER RIBOSOMAL PROTEIN L2 52 204 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi5g1377 204 Pfam Ribosomal Proteins L2, C-terminal domain 58 188 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi5g1377 204 SUPERFAMILY Translation proteins SH3-like domain 59 196 IPR008991 -
Vvi5g1377 204 MobiDBLite consensus disorder prediction 158 204 - -
Vvi5g1377 204 TIGRFAM rplB_bact: ribosomal protein uL2 54 201 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vvi5g1377 204 Gene3D Ribosomal protein L2, domain 3 130 204 IPR014726 -
Vvi5g1377 204 SMART Ribosomal_L2_C_2 57 190 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi5g1377 204 Gene3D - 48 129 IPR014722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1377 - - - vvi:100266379 397.127
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01025 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012682 1 1 1 1 1 0 2 0 0 0 1 0 2 1 1 2 0 1 1 1 1 1 1 1 2 0 0 2 2 1 28