Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1378 ATGGCTTCGGTACAGTCAATCCGCTGTGTAAACCCTCGTTTGGATTCTAACCCCCATCTAGGGTTTTCCAGAGCCCTATGGCTTTCACTACCAATTTCAAAGCTCAAGAATCCACAGTTGGGGAAGCTGGTGGTCTCTGCAAGCAGCGCTGAAAACGGGGTCGGTTTCAATGACAAAACCGCCGCTGTTGCCAACCCTGCGCCTTCTGCAGCCAGGTCCAAAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGATTAATCGAATTGCCGGGGTCTTTGCAAGAAGGGGATATAACATTGACTCCCTTGCTGTTGGTCTGAACAAGGACAAGGCGCTCTTCACTATTGTTGTCTCTGGAACTGAAAGGGTGTTGCAGCAAGTTGTAGAGCAACTTCACAAGCTTGTGAATGTTCTGAAGGTTGAAGATATCTCAACTGAGCCGCATGTAGAACGTGAACTGATGCTCATAAAAGTCAATGCGAATCCCCAGTATCGTGCTGAGATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGGTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAGTTCGGAATTAGAGAAATTGCTAGAACTGGAAAGATTGCCTTGAGAAGGGAAAAAATGGGCGAGTCTGCTCCATTTTGGCGATTTTCAGCATCTTCATATCCTGATCTTGAAGGAGAAATTCCAGAAAACACTTTTGTGGAAACCAGAACTAAAACACTCAATAGTGAATCTGATGCATCTGTTGGAGGAGATGTTTATCCAGTGGAACCATCTGATGGGTTCTTATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGATACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTGGAGTTCTTAATCTTGTTACTGGGGTTTTTGCAAGGAGGGGATATAACATCCAGAGTCTGGCAGTTGGTCATGCAGAAGTTGAGGGTCTCTCTCGCATTACAACTGTTGTTCCTGGTACAGATGAATCTATTAACAAGTTGGTGCAACAACTTAAGAAGCTAATAGATCTTCATGATGTTCGGGATATTACCCACTTACCCTTTGCTGAGCGAGAGTTGATGTTGATAAAGATTGCTGTGAATGCTGCTGCTCGGCGTGATGTCCTTGATATTGCCAGCATTTTCAGGGCCAAAGCCATTGACGTGTCTGATCACACAATAACCCTTGAGCTTACAGGAGCTTTAGACAAAATGGTTGCTCTGCAAAGGCTGTTAGAGCCCTATGGCATTTGTGAGGTGGCACGAACTGGGCGGGTGGCGTTGGTGCGTGAGTCGGGTGTGGACTCCAATTATCTCCGCGGTTATGCATTTCCTCTCGAGGCTTAA 1449 45.27 MASVQSIRCVNPRLDSNPHLGFSRALWLSLPISKLKNPQLGKLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTEPHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGEIPENTFVETRTKTLNSESDASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQQLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITLELTGALDKMVALQRLLEPYGICEVARTGRVALVRESGVDSNYLRGYAFPLEA* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24444465 24453192 + Vvi5g1378 Vvi5g1378 787520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1378 482 SUPERFAMILY ACT-like 311 384 IPR045865 -
Vvi5g1378 482 Gene3D - 391 468 IPR027271 -
Vvi5g1378 482 PANTHER ACETOLACTATE SYNTHASE SMALL SUBUNIT 1, CHLOROPLASTIC 59 480 - -
Vvi5g1378 482 CDD ACT_AHAS 78 147 IPR039557 -
Vvi5g1378 482 Gene3D - 74 152 - -
Vvi5g1378 482 Gene3D - 307 386 - -
Vvi5g1378 482 ProSiteProfiles ACT domain profile. 79 151 IPR002912 -
Vvi5g1378 482 Pfam ACT domain 319 381 - -
Vvi5g1378 482 SUPERFAMILY ACT-like 152 231 IPR045865 -
Vvi5g1378 482 ProSiteProfiles ACT domain profile. 312 386 IPR002912 -
Vvi5g1378 482 PANTHER ACETOLACTATE SYNTHASE SMALL SUBUNIT 59 480 IPR004789 GO:0009082|GO:1990610
Vvi5g1378 482 CDD ACT_AHAS 311 382 IPR039557 -
Vvi5g1378 482 SUPERFAMILY ACT-like 388 466 IPR045865 -
Vvi5g1378 482 TIGRFAM acolac_sm: acetolactate synthase, small subunit 77 230 IPR004789 GO:0009082|GO:1990610
Vvi5g1378 482 TIGRFAM acolac_sm: acetolactate synthase, small subunit 310 465 IPR004789 GO:0009082|GO:1990610
Vvi5g1378 482 Gene3D - 153 229 IPR027271 -
Vvi5g1378 482 Pfam ACT domain 78 141 IPR002912 -
Vvi5g1378 482 Pfam Small subunit of acetolactate synthase 392 464 IPR019455 -
Vvi5g1378 482 Pfam Small subunit of acetolactate synthase 157 229 IPR019455 -
Vvi5g1378 482 SUPERFAMILY ACT-like 74 150 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1378 K01653 E2.2.1.6S, ilvH, ilvN; acetolactate synthase I/III small subunit [EC:2.2.1.6] - vvi:100261174 933.324
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001627 3 3 1 2 1 3 3 3 3 3 2 1 3 0 2 3 2 4 2 2 2 3 2 1 3 4 2 3 3 1 70