Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g138 ATGGCGGCAAAGACCCAACAGAGCAACAAATCTAATAAAAGAAAGCAAATTACAGGTCCTCACAGCAAGTCAGATACCTCACCGTCCAAGAAGCCGAAGCTCCTTCAATCCAAATCCTCCAATCCTGGAAACAAGGGCCTGAACAAGCCCTTCAAATCGTTCAAACAACAGCGCCCCGTCAAATCGCATTCCGGAAAATTAGAAACTGCTGGAGCAAACGAGGGTCCAAAATCGAAGAGAGAACGTCGGTTGCATGCCAAGGAACTGACAGAGGCTAGGAAAAAGAAGAGAAAGAAGCATTACACTCTTGAACAAGAGCTTGCATCACTGTGGGAAAAGATGAGGCGCCGTAATATTGCAAAAGAAGATAGATCTAGGTTGGTGAGTGAAGCTCTACATAAGATGAAAGGGAAAATCCCTGAAATAGCAGGATCCCATGTTTCTTCCCGTGTGCTGCAGACTTGTGTTAAGTACTGTACACAAGCTGAAAGGGATGCTGTATTTGAGGAGCTTCAGCCACAGCTTCTCACCCTTGCATGCAACACGTATGCAGTGCATCTGGTGAAGAAAATGTTAGATAATGCCTCTAAGAAACATCTGGCAGCATTTATGTCTTCCCTCCATGGCCATGTTGCTTCTCTTCTTCGTCATATGGTTGGATCTGTTGTTGTTGAGCACGCATACCAGTTGGGAAATGCAACTCAGAAACAAGAGCTTCTGATGGAATTGTATGCCACAGAGCTTCAGTTGTTCAAGGACTTGGCCTCAGTAAAAGAGAGCAGGTTAATAGATGTAATTTCTAAACTAGGACTGCAAAAAGGTTCTGTCTTACGACACATGAGCTCTGTGATTCAACCAATTTTGGAGAAAGGAATAGTTGACCACTCTATCATACACAGGGCATTAATGGAATACTTAAGCATTGCTGACAAGTCATCTGCTGCAGAAGTAATCCAGCAGTTATCAGGTGCACTCCTTGTTCGAATGATCCATACCAGGGATGGATCCAGGATTGGGTTGCTCTGCATCAAACATGGGAGTGCAAAGGAAAGAAAGAAAATTATCAAAGGAATGAAAGGCCACATAGACAAGATAGCTCATGATCAATGTGGGAGTATGGTGCTTGCTTACATTCTTTCAACTGTCGATGACACAAAACTACTAACTAAGGTTATTATTCGTGAGCTTCAAGCAATTTTGAAAGAGCTTCTTTTGGATAAGAATGGAAGACGAGTCTTATTGCAGCTCCTTCATCCAAATTGTTCCCGCTATTTCAGTCCAGAGGATCTGGTTTCTTTCAATTTGTCTATTCCTTCTCTTAGTCCCAAGAGTGAGTCCAAGGTAAATCCTGACTCTGTTAAGGAAGCAAAATCTTCTAAGACCAAGGAATCTGGTGATGAGGAGACAAAGGGTGACCTAGAGGTAACTACAGCTGAGGCCAATGAAAACACTAGCCCCAGTGAGAGCCATCACATAGCTGAAGGTGGAAAAAAGGATCCAAATCTAAGAAGACAAGAGTTGTTGGTTGATAGTGGGCTTGCTGAGAATCTCATTGACACATGTATTGAGAGTGCAGGAGAATTACTTAGATCAAATTTTGGCAAAGAAGTCATGTATGAGGTTGCAACCGGGGGTGCTGGTGGCATTCTACGCCCAGCTTTGGATGAAAAGTTAGATGCACTACATGGAGCTATAGCATCTCTTGCAGCACAGCCTAAATCAGAAGAATCAGAAGAGGAACATGTCCTTGAAAATTTTCACTCCAGCAGGACCATTAGAAAACTGGTCTTGGACTGCCCTACTTTTGCTTCCACTCTGTGGAAGATAGCTCTTGGAGGGAAGTGCGAAATGTGGGCCCAGGGTCACAGTCATAAGGTAGTTTTGGCATTCTTAGAGGCCTCTGATTCTGAGGTATGTGAGCTGGCCAAGGGAGAGCTGCAGCCCTTGATAGATAGTGGCATTCTCAAGATCCCAGAGACCAAGCAGTAG 1989 43.99 MAAKTQQSNKSNKRKQITGPHSKSDTSPSKKPKLLQSKSSNPGNKGLNKPFKSFKQQRPVKSHSGKLETAGANEGPKSKRERRLHAKELTEARKKKRKKHYTLEQELASLWEKMRRRNIAKEDRSRLVSEALHKMKGKIPEIAGSHVSSRVLQTCVKYCTQAERDAVFEELQPQLLTLACNTYAVHLVKKMLDNASKKHLAAFMSSLHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLMELYATELQLFKDLASVKESRLIDVISKLGLQKGSVLRHMSSVIQPILEKGIVDHSIIHRALMEYLSIADKSSAAEVIQQLSGALLVRMIHTRDGSRIGLLCIKHGSAKERKKIIKGMKGHIDKIAHDQCGSMVLAYILSTVDDTKLLTKVIIRELQAILKELLLDKNGRRVLLQLLHPNCSRYFSPEDLVSFNLSIPSLSPKSESKVNPDSVKEAKSSKTKESGDEETKGDLEVTTAEANENTSPSESHHIAEGGKKDPNLRRQELLVDSGLAENLIDTCIESAGELLRSNFGKEVMYEVATGGAGGILRPALDEKLDALHGAIASLAAQPKSEESEEEHVLENFHSSRTIRKLVLDCPTFASTLWKIALGGKCEMWAQGHSHKVVLAFLEASDSEVCELAKGELQPLIDSGILKIPETKQ* 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1400041 1407785 + Vvi5g138 Vvi5g138 786280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g138 662 Pfam Pumilio-family RNA binding repeat 149 171 IPR001313 GO:0003723
Vvi5g138 662 Pfam Pumilio-family RNA binding repeat 210 243 IPR001313 GO:0003723
Vvi5g138 662 MobiDBLite consensus disorder prediction 448 475 - -
Vvi5g138 662 PANTHER UNCHARACTERIZED 1 661 IPR040059 GO:0003723
Vvi5g138 662 MobiDBLite consensus disorder prediction 73 88 - -
Vvi5g138 662 MobiDBLite consensus disorder prediction 1 97 - -
Vvi5g138 662 MobiDBLite consensus disorder prediction 1 60 - -
Vvi5g138 662 ProSiteProfiles Pumilio RNA-binding repeat profile. 170 205 IPR001313 GO:0003723
Vvi5g138 662 SMART pum_5 357 394 IPR001313 GO:0003723
Vvi5g138 662 SMART pum_5 170 205 IPR001313 GO:0003723
Vvi5g138 662 SMART pum_5 134 169 IPR001313 GO:0003723
Vvi5g138 662 SMART pum_5 206 241 IPR001313 GO:0003723
Vvi5g138 662 SMART pum_5 321 356 IPR001313 GO:0003723
Vvi5g138 662 ProSiteProfiles Pumilio RNA-binding repeat profile. 206 242 IPR001313 GO:0003723
Vvi5g138 662 MobiDBLite consensus disorder prediction 440 500 - -
Vvi5g138 662 Pfam CPL (NUC119) domain 493 596 IPR012959 GO:0003723
Vvi5g138 662 SUPERFAMILY ARM repeat 115 427 IPR016024 -
Vvi5g138 662 Gene3D - 106 433 IPR011989 -
Vvi5g138 662 Coils Coil 86 106 - -
Vvi5g138 662 MobiDBLite consensus disorder prediction 476 490 - -
Vvi5g138 662 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 106 457 IPR033133 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g138 K14844 PUF6; pumilio homology domain family member 6 - vvi:100255113 1265.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31