Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1382 ATGCTTCATAAAATCATTATCAAACAAATTCTTAGAATATCTAGGGCTTGCAGGCAGGCAACAATGGCGGATGGTGAAGAAGTGGGCAACACGCAAGTGATTTTCAGAGGCTATGTCTCTGGTTTTCCCAATGAATCGGACTTGTACTTGGCTAACTCTAGAATAAGCCTCAAGGTTCCAGAAGGTTCCAAGGCCGTGGTAGTGAAGAACCTCTACTTGTCCTGCGATCCCTACATGCGCCTCCGTATGAGCTGCGACGCCAACTATTTCCAGCCCTTCAAGCCCGGCTCGGTTATGACTGGAAATGGAGTGGCTAAAGTTATGGACTCTGGGCATCCAAGCTTCAGCAAAGGTGACTTGGTTTGGGGAATTACCAGATGGGAAGAGTATACTCTCGTAACAGCAACAGAGTCTCTGTTTGAAATTCCGGACACTGATGTCCCCCTTTCATACTATATTGGAATTCTTGGTGTGCCTGGTTTGACTGCTTATGTTGGTTTTTATGAGCTTTGCACTCCTAAGAAAGGGGAGTATGTCTATGTTTCATCTGCATCAGGAGCAGTGGGTCAGCTTGTTGGGCAGTTTGCAAAGTTGTTGGGTTGCTATGTTGTTGGAAGTGCTGGAACAAAAGAAAAGGTTGATTTGTTGAAAAACAAGTTTGGGTTTGATGAAGCTTTCAACTACAAGGAAGAGCAGGATTTGGCTACATGCTTGAAAAGGTACTTCCCTGAAGGCATTGATATTTACTTTGAGAATGTGGGGGGAGCGATGCTTGATGCAGTGTTACCTAACATGAGAGTCCATGGTCGCATAGCTGCCTGCGGGATGATTTCACAGTACAATCTTGACAAACCTGAGGGCATATACAACTTGATGAATGTTATCAATAAACAGATCAAAATGCAGGGGTTTATCACTCCAAGCTACTTTCACCTCTATCCCAAATTCCTGGAGACGATTCTGCCTCACATCAAAGAAGGTAAGGTTGCATATGTGGAAGATGTAGCTGAAGGCCTTCAGAATGCTCCACCGGCTCTTATTGGGCTCTTTTCTGGGCACAATGTCGGAAAACAGGTAATTCAAGTTGCTATGGAATGA 1098 44.63 MLHKIIIKQILRISRACRQATMADGEEVGNTQVIFRGYVSGFPNESDLYLANSRISLKVPEGSKAVVVKNLYLSCDPYMRLRMSCDANYFQPFKPGSVMTGNGVAKVMDSGHPSFSKGDLVWGITRWEEYTLVTATESLFEIPDTDVPLSYYIGILGVPGLTAYVGFYELCTPKKGEYVYVSSASGAVGQLVGQFAKLLGCYVVGSAGTKEKVDLLKNKFGFDEAFNYKEEQDLATCLKRYFPEGIDIYFENVGGAMLDAVLPNMRVHGRIAACGMISQYNLDKPEGIYNLMNVINKQIKMQGFITPSYFHLYPKFLETILPHIKEGKVAYVEDVAEGLQNAPPALIGLFSGHNVGKQVIQVAME* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24472632 24476376 - Vvi5g1382 Vvi5g1382 787524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1382 365 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 29 364 - -
Vvi5g1382 365 Gene3D - 33 360 - -
Vvi5g1382 365 SUPERFAMILY GroES-like 28 192 IPR011032 -
Vvi5g1382 365 Pfam Zinc-binding dehydrogenase 187 319 IPR013149 -
Vvi5g1382 365 SUPERFAMILY GroES-like 308 361 IPR011032 -
Vvi5g1382 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 325 IPR036291 -
Vvi5g1382 365 Pfam N-terminal domain of oxidoreductase 32 137 IPR041694 -
Vvi5g1382 365 CDD double_bond_reductase_like 28 362 - -
Vvi5g1382 365 Gene3D - 155 331 - -
Vvi5g1382 365 PANTHER PROSTAGLANDIN REDUCTASE 29 364 IPR045010 GO:0016628
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1382 K19825 DBR; 2-alkenal reductase (NADP+) [EC:1.3.1.102] - vvi:100259258 701.819
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000230 2 7 2 5 2 5 1 7 8 6 7 7 5 7 6 4 7 9 4 6 4 6 5 5 4 6 2 6 7 7 159