Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1383 ATGGCGGACGCTGAAGAAGTGAGCAACAAGCAGGTGATTTTCAGGGACTACGTCTCTGGTTTTCCTAAAGAATCCGACATGTACATGACCACTTCCACGATAAGCCTCAAGGTTCCAGAAGGTTCCAAGGCCGTGGTGGTGAAGAACCTCTACTTGTCATGCGATCCCTACATGCGGCCTCGTATGAGCTACACTACGGACAGCTACATCCACTCCTTCAAGCCTGGTTCGGTTATAAGTGGATATGGAGTGGCAAAAGTTTTGGATTCTGGGCATCCAAACTTCAGCAAAGGGGACTTGGTTTGGGGATTTACCGGATGGGAAGAGTATACTCTCATTACAGCACCAGAGTCTCTGTTTAAAATTCCCAACAACGATGTCCCCCTTTCATACTATATTGGAATTCTTGGTATGCCTGGTATTACTGCATATGCTGGTTTTTACGAGATTTGCTCTCCTAAGAAAGGAGAGTATGTCTATGTTTCAGCTGCATCAGGAGCAGTGGGTCAACTTGTTGGCCAGTTTGCGAAGTTGATAGGTTGCTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATCTGTTGAAAAACAAGTTTGGGTTTGATGAAGCTTTCAACTACAAAGAAGAGCAGGATTTGGTTGCATGCTTGAAAAGGTACTTCCCTGAAGGCATTGATATTTACTTTGAGAATGTTGGGGGGCCGATGCTTGATGCGGTTCTAGCTAACATGAGAGTCCAAGGCCGCATAGCTGCCTGCGGGATGATTTCCCAGTACAATCTTGACAAGCCCATGATTCTGCCTCACGTCAAAGAAGGGAAGGTTGTATATGTGGAAGACATAGCTGAAGGCCTTGAGAGTGCTCCACAGGCTCTTATTGGCCTCTTCTCCGGGCGCAATGTTGGGAAACAGGTTGTTCTAGTTGCTAGGGAATGA 939 46.22 MADAEEVSNKQVIFRDYVSGFPKESDMYMTTSTISLKVPEGSKAVVVKNLYLSCDPYMRPRMSYTTDSYIHSFKPGSVISGYGVAKVLDSGHPNFSKGDLVWGFTGWEEYTLITAPESLFKIPNNDVPLSYYIGILGMPGITAYAGFYEICSPKKGEYVYVSAASGAVGQLVGQFAKLIGCYVVGSAGSKEKVDLLKNKFGFDEAFNYKEEQDLVACLKRYFPEGIDIYFENVGGPMLDAVLANMRVQGRIAACGMISQYNLDKPMILPHVKEGKVVYVEDIAEGLESAPQALIGLFSGRNVGKQVVLVARE* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24476923 24479567 - Vvi5g1383 Vvi5g1383 787525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1383 312 PANTHER PROSTAGLANDIN REDUCTASE 266 312 IPR045010 GO:0016628
Vvi5g1383 312 PANTHER PROSTAGLANDIN REDUCTASE 3 265 IPR045010 GO:0016628
Vvi5g1383 312 Pfam Zinc-binding dehydrogenase 167 260 IPR013149 -
Vvi5g1383 312 PANTHER - 266 312 - -
Vvi5g1383 312 PANTHER - 3 265 - -
Vvi5g1383 312 Gene3D - 3 140 - -
Vvi5g1383 312 CDD double_bond_reductase_like 7 309 - -
Vvi5g1383 312 Pfam N-terminal domain of oxidoreductase 10 121 IPR041694 -
Vvi5g1383 312 SUPERFAMILY GroES-like 268 307 IPR011032 -
Vvi5g1383 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 275 IPR036291 -
Vvi5g1383 312 SUPERFAMILY GroES-like 7 172 IPR011032 -
Vvi5g1383 312 Gene3D - 141 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1383 K19825 DBR; 2-alkenal reductase (NADP+) [EC:1.3.1.102] - vvi:100268122 613.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1383 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .